Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N36_RS07370 Genome accession   NZ_CP162150
Coordinates   1586409..1587035 (+) Length   208 a.a.
NCBI ID   WP_048979351.1    Uniprot ID   -
Organism   Enterobacter asburiae strain STS63-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581409..1592035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N36_RS07350 (AB3N36_07350) - 1581809..1583569 (-) 1761 WP_048979352.1 Lon protease family protein -
  AB3N36_RS07355 (AB3N36_07355) matP 1583756..1584208 (+) 453 WP_032658161.1 macrodomain Ter protein MatP -
  AB3N36_RS07360 (AB3N36_07360) ompA 1584272..1585327 (-) 1056 WP_115504044.1 porin OmpA -
  AB3N36_RS07365 (AB3N36_07365) sulA 1585682..1586191 (-) 510 WP_033145120.1 SOS-induced cell division inhibitor SulA -
  AB3N36_RS07370 (AB3N36_07370) sxy/tfoX 1586409..1587035 (+) 627 WP_048979351.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3N36_RS07375 (AB3N36_07375) yccS 1586992..1589154 (-) 2163 WP_039261616.1 YccS family putative transporter -
  AB3N36_RS07380 (AB3N36_07380) - 1589174..1589620 (-) 447 WP_023311032.1 YccF domain-containing protein -
  AB3N36_RS07385 (AB3N36_07385) helD 1589744..1591798 (+) 2055 WP_048979349.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23936.54 Da        Isoelectric Point: 9.4588

>NTDB_id=1024271 AB3N36_RS07370 WP_048979351.1 1586409..1587035(+) (sxy/tfoX) [Enterobacter asburiae strain STS63-C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHFSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1024271 AB3N36_RS07370 WP_048979351.1 1586409..1587035(+) (sxy/tfoX) [Enterobacter asburiae strain STS63-C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTCCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGAGAGCGGCTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTTAAGGATCTGCCAAACCTGACGTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAGGTTCTCTTCGCACTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTTCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment