Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3L01_RS16540 Genome accession   NZ_CP162145
Coordinates   3408668..3409078 (-) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain SIMBA089     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403668..3414078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3L01_RS16510 (AB3L01_16510) - 3403754..3404023 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  AB3L01_RS16515 (AB3L01_16515) rapZ 3404020..3404871 (-) 852 WP_000821671.1 RNase adapter RapZ -
  AB3L01_RS16520 (AB3L01_16520) panC 3404894..3405742 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AB3L01_RS16525 (AB3L01_16525) panB 3405746..3406555 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AB3L01_RS16530 (AB3L01_16530) folK 3406601..3407083 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AB3L01_RS16535 (AB3L01_16535) pcnB 3407080..3408543 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AB3L01_RS16540 (AB3L01_16540) comEA 3408668..3409078 (-) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  AB3L01_RS16545 (AB3L01_16545) mazG 3409047..3409853 (-) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  AB3L01_RS16550 (AB3L01_16550) - 3409965..3410738 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  AB3L01_RS16555 (AB3L01_16555) - 3410783..3413089 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=1024250 AB3L01_RS16540 WP_001200131.1 3408668..3409078(-) (comEA) [Acinetobacter baumannii strain SIMBA089]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1024250 AB3L01_RS16540 WP_001200131.1 3408668..3409078(-) (comEA) [Acinetobacter baumannii strain SIMBA089]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment