Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM62_RS08190 Genome accession   NZ_LS483418
Coordinates   1619269..1619763 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0ABV2ENX4
Organism   Streptococcus suis strain NCTC10234     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1614269..1624763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS08170 (NCTC10234_01606) - 1616991..1617935 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  DQM62_RS08175 (NCTC10234_01607) - 1617951..1618607 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  DQM62_RS08185 (NCTC10234_01608) rpsR 1618997..1619236 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  DQM62_RS08190 (NCTC10234_01609) ssbA 1619269..1619763 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  DQM62_RS08195 (NCTC10234_01610) rpsF 1619775..1620065 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  DQM62_RS08200 (NCTC10234_01611) - 1620305..1621468 (+) 1164 WP_011922710.1 IS30 family transposase -
  DQM62_RS08205 (NCTC10234_01612) - 1621787..1622776 (-) 990 WP_012027737.1 lipoate--protein ligase -
  DQM62_RS08210 (NCTC10234_01613) - 1622906..1624096 (+) 1191 WP_012027738.1 DUF6688 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=1024059 DQM62_RS08190 WP_002942409.1 1619269..1619763(-) (ssbA) [Streptococcus suis strain NCTC10234]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1024059 DQM62_RS08190 WP_002942409.1 1619269..1619763(-) (ssbA) [Streptococcus suis strain NCTC10234]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366