Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AB3G27_RS16165 Genome accession   NZ_CP162095
Coordinates   3160922..3162097 (-) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155922..3167097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS16130 (AB3G27_16130) - 3156090..3156509 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AB3G27_RS16135 (AB3G27_16135) comFC 3156566..3157072 (-) 507 WP_050782676.1 ComF family protein Machinery gene
  AB3G27_RS16140 (AB3G27_16140) - 3157085..3157252 (-) 168 Protein_3121 ComF family protein -
  AB3G27_RS16145 (AB3G27_16145) - 3157249..3157542 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  AB3G27_RS16150 (AB3G27_16150) comFA 3157609..3158736 (-) 1128 WP_368197169.1 DEAD/DEAH box helicase Machinery gene
  AB3G27_RS16155 (AB3G27_16155) - 3159108..3159950 (-) 843 WP_003213402.1 DegV family protein -
  AB3G27_RS16160 (AB3G27_16160) degU 3160168..3160857 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB3G27_RS16165 (AB3G27_16165) degS 3160922..3162097 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB3G27_RS16170 (AB3G27_16170) - 3162319..3162987 (+) 669 WP_368197173.1 YigZ family protein -
  AB3G27_RS16175 (AB3G27_16175) - 3162972..3164060 (+) 1089 WP_212045589.1 LCP family protein -
  AB3G27_RS16180 (AB3G27_16180) - 3164095..3165162 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -
  AB3G27_RS16185 (AB3G27_16185) - 3165297..3166487 (-) 1191 WP_226805380.1 glycosyltransferase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=1024013 AB3G27_RS16165 WP_003213166.1 3160922..3162097(-) (degS) [Bacillus pumilus strain LBUM494]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=1024013 AB3G27_RS16165 WP_003213166.1 3160922..3162097(-) (degS) [Bacillus pumilus strain LBUM494]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACTATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCACGACGGTCCGGCCCAAATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGTATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTTACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTTGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841

Multiple sequence alignment