Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB3G27_RS16160 Genome accession   NZ_CP162095
Coordinates   3160168..3160857 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain LBUM494     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155168..3165857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS16120 (AB3G27_16120) - 3155246..3155728 (-) 483 WP_003213076.1 flagellar protein FlgN -
  AB3G27_RS16125 (AB3G27_16125) flgM 3155747..3156010 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3G27_RS16130 (AB3G27_16130) - 3156090..3156509 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AB3G27_RS16135 (AB3G27_16135) comFC 3156566..3157072 (-) 507 WP_050782676.1 ComF family protein Machinery gene
  AB3G27_RS16140 (AB3G27_16140) - 3157085..3157252 (-) 168 Protein_3121 ComF family protein -
  AB3G27_RS16145 (AB3G27_16145) - 3157249..3157542 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  AB3G27_RS16150 (AB3G27_16150) comFA 3157609..3158736 (-) 1128 WP_368197169.1 DEAD/DEAH box helicase Machinery gene
  AB3G27_RS16155 (AB3G27_16155) - 3159108..3159950 (-) 843 WP_003213402.1 DegV family protein -
  AB3G27_RS16160 (AB3G27_16160) degU 3160168..3160857 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB3G27_RS16165 (AB3G27_16165) degS 3160922..3162097 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB3G27_RS16170 (AB3G27_16170) - 3162319..3162987 (+) 669 WP_368197173.1 YigZ family protein -
  AB3G27_RS16175 (AB3G27_16175) - 3162972..3164060 (+) 1089 WP_212045589.1 LCP family protein -
  AB3G27_RS16180 (AB3G27_16180) - 3164095..3165162 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1024012 AB3G27_RS16160 WP_008348273.1 3160168..3160857(-) (degU) [Bacillus pumilus strain LBUM494]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1024012 AB3G27_RS16160 WP_008348273.1 3160168..3160857(-) (degU) [Bacillus pumilus strain LBUM494]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTCAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment