Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB3G27_RS14545 Genome accession   NZ_CP162095
Coordinates   2846954..2847595 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain LBUM494     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841954..2852595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS14510 (AB3G27_14510) - 2843086..2843517 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  AB3G27_RS14515 (AB3G27_14515) - 2843517..2843858 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AB3G27_RS14520 (AB3G27_14520) - 2843851..2845329 (+) 1479 WP_309215906.1 Na+/H+ antiporter subunit D -
  AB3G27_RS14525 (AB3G27_14525) - 2845336..2845815 (+) 480 WP_044140819.1 Na+/H+ antiporter subunit E -
  AB3G27_RS14530 (AB3G27_14530) - 2845815..2846096 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  AB3G27_RS14535 (AB3G27_14535) mnhG 2846080..2846454 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AB3G27_RS14540 (AB3G27_14540) - 2846541..2846930 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  AB3G27_RS14545 (AB3G27_14545) comA 2846954..2847595 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  AB3G27_RS14550 (AB3G27_14550) comP 2847676..2849982 (-) 2307 WP_044140820.1 ATP-binding protein Regulator
  AB3G27_RS14555 (AB3G27_14555) comX 2849996..2850166 (-) 171 WP_012011107.1 competence pheromone ComX -
  AB3G27_RS14560 (AB3G27_14560) - 2850144..2851067 (-) 924 WP_106029260.1 polyprenyl synthetase family protein -
  AB3G27_RS14565 (AB3G27_14565) degQ 2851219..2851359 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB3G27_RS14570 (AB3G27_14570) - 2851865..2852218 (+) 354 WP_212045491.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=1024004 AB3G27_RS14545 WP_003213500.1 2846954..2847595(-) (comA) [Bacillus pumilus strain LBUM494]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1024004 AB3G27_RS14545 WP_003213500.1 2846954..2847595(-) (comA) [Bacillus pumilus strain LBUM494]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCTCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment