Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQN44_RS09510 Genome accession   NZ_LS483414
Coordinates   1848047..1848643 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13736     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843047..1853643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN44_RS09475 (NCTC13736_01876) - 1843107..1843412 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQN44_RS09480 (NCTC13736_01877) ruvX 1843424..1843843 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQN44_RS09485 (NCTC13736_01878) - 1843840..1844109 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQN44_RS09490 (NCTC13736_01879) spx 1844223..1844621 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQN44_RS09495 (NCTC13736_01880) recA 1844912..1846048 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQN44_RS09500 (NCTC13736_01881) cinA 1846137..1847408 (-) 1272 WP_030127534.1 competence/damage-inducible protein A Machinery gene
  DQN44_RS09505 (NCTC13736_01882) - 1847477..1848037 (-) 561 WP_030127533.1 DNA-3-methyladenine glycosylase I -
  DQN44_RS09510 (NCTC13736_01883) ruvA 1848047..1848643 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  DQN44_RS09515 (NCTC13736_01884) - 1848645..1849865 (-) 1221 WP_030127532.1 MDR family MFS transporter -
  DQN44_RS09520 (NCTC13736_01885) hexB 1849876..1851858 (-) 1983 WP_002992189.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=1023760 DQN44_RS09510 WP_002982180.1 1848047..1848643(-) (ruvA) [Streptococcus pyogenes strain NCTC13736]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1023760 DQN44_RS09510 WP_002982180.1 1848047..1848643(-) (ruvA) [Streptococcus pyogenes strain NCTC13736]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTGTTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424