Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3G53_RS02955 Genome accession   NZ_CP161999
Coordinates   632989..633399 (+) Length   136 a.a.
NCBI ID   WP_057092817.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA061     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627989..638399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G53_RS02940 (AB3G53_02940) - 628978..631284 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB3G53_RS02945 (AB3G53_02945) - 631329..632102 (-) 774 WP_057092818.1 SDR family oxidoreductase -
  AB3G53_RS02950 (AB3G53_02950) mazG 632214..633020 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  AB3G53_RS02955 (AB3G53_02955) comEA 632989..633399 (+) 411 WP_057092817.1 ComEA family DNA-binding protein Machinery gene
  AB3G53_RS02960 (AB3G53_02960) pcnB 633524..634987 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AB3G53_RS02965 (AB3G53_02965) folK 634984..635466 (+) 483 WP_000219222.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AB3G53_RS02970 (AB3G53_02970) panB 635512..636321 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AB3G53_RS02975 (AB3G53_02975) panC 636325..637173 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AB3G53_RS02980 (AB3G53_02980) rapZ 637196..638047 (+) 852 WP_000821671.1 RNase adapter RapZ -
  AB3G53_RS02985 (AB3G53_02985) - 638044..638313 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15656.94 Da        Isoelectric Point: 10.3495

>NTDB_id=1023378 AB3G53_RS02955 WP_057092817.1 632989..633399(+) (comEA) [Acinetobacter baumannii strain SIMBA061]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1023378 AB3G53_RS02955 WP_057092817.1 632989..633399(+) (comEA) [Acinetobacter baumannii strain SIMBA061]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

99.265

100

0.993
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

44.275

96.324

0.426

Multiple sequence alignment