Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AB3G49_RS16415 Genome accession   NZ_CP161986
Coordinates   3437402..3438142 (-) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432402..3443142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G49_RS16395 (AB3G49_16395) aroB 3432944..3434026 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  AB3G49_RS16400 (AB3G49_16400) aroK 3434055..3434624 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AB3G49_RS16405 (AB3G49_16405) pilQ 3434636..3436801 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AB3G49_RS16410 (AB3G49_16410) pilP 3436864..3437391 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB3G49_RS16415 (AB3G49_16415) pilO 3437402..3438142 (-) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB3G49_RS16420 (AB3G49_16420) pilN 3438139..3438780 (-) 642 WP_031958555.1 PilN domain-containing protein Machinery gene
  AB3G49_RS16425 (AB3G49_16425) pilM 3438780..3439838 (-) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  AB3G49_RS16430 (AB3G49_16430) ponA 3439999..3442554 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=1023215 AB3G49_RS16415 WP_000076097.1 3437402..3438142(-) (pilO) [Acinetobacter baumannii strain SIMBA003]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1023215 AB3G49_RS16415 WP_000076097.1 3437402..3438142(-) (pilO) [Acinetobacter baumannii strain SIMBA003]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment