Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQM86_RS08530 Genome accession   NZ_LS483407
Coordinates   1662919..1663593 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain NCTC13744     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657919..1668593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM86_RS08515 (NCTC13744_01685) - 1659557..1660945 (-) 1389 WP_011285225.1 sensor histidine kinase -
  DQM86_RS08520 (NCTC13744_01686) - 1660942..1661595 (-) 654 WP_002991237.1 response regulator transcription factor -
  DQM86_RS08525 (NCTC13744_01687) - 1661689..1662906 (-) 1218 WP_002993552.1 ABC transporter permease -
  DQM86_RS08530 (NCTC13744_01688) amiE 1662919..1663593 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  DQM86_RS08535 (NCTC13744_01689) - 1663580..1664848 (-) 1269 WP_111674745.1 efflux RND transporter periplasmic adaptor subunit -
  DQM86_RS08540 (NCTC13744_01690) - 1665272..1665556 (-) 285 WP_002982442.1 hypothetical protein -
  DQM86_RS08545 (NCTC13744_01691) - 1665703..1665999 (-) 297 WP_002982439.1 DUF4298 domain-containing protein -
  DQM86_RS08550 (NCTC13744_01692) - 1666243..1666479 (+) 237 WP_002993564.1 hypothetical protein -
  DQM86_RS08555 (NCTC13744_01693) prsA 1666750..1667679 (-) 930 WP_002993567.1 peptidylprolyl isomerase PrsA -
  DQM86_RS08565 (NCTC13744_01694) - 1668159..1668464 (-) 306 WP_002993568.1 Spi family protease inhibitor -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=1023217 DQM86_RS08530 WP_002982458.1 1662919..1663593(-) (amiE) [Streptococcus pyogenes strain NCTC13744]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1023217 DQM86_RS08530 WP_002982458.1 1662919..1663593(-) (amiE) [Streptococcus pyogenes strain NCTC13744]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGAACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAATTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTACC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366

Multiple sequence alignment