Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DQN23_RS09475 Genome accession   NZ_LS483403
Coordinates   1682544..1682756 (-) Length   70 a.a.
NCBI ID   WP_228380498.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677544..1687756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS08415 (NCTC13774_01760) - 1678544..1679497 (+) 954 WP_111713029.1 S66 peptidase family protein -
  DQN23_RS08420 (NCTC13774_01761) - 1679585..1680091 (-) 507 WP_111713030.1 transporter -
  DQN23_RS08430 (NCTC13774_01762) - 1680465..1680740 (-) 276 WP_058832872.1 hypothetical protein -
  DQN23_RS08435 (NCTC13774_01763) - 1680967..1682046 (-) 1080 WP_061409008.1 hypothetical protein -
  DQN23_RS09465 - 1682027..1682266 (-) 240 WP_231997009.1 hypothetical protein -
  DQN23_RS09470 (NCTC13774_01764) - 1682277..1682501 (-) 225 WP_228380497.1 hypothetical protein -
  DQN23_RS09475 (NCTC13774_01765) comA 1682544..1682756 (-) 213 WP_228380498.1 ATP-binding cassette domain-containing protein Regulator
  DQN23_RS08445 (NCTC13774_01766) - 1682806..1683021 (-) 216 WP_043895140.1 hypothetical protein -
  DQN23_RS08450 (NCTC13774_01768) - 1683587..1684477 (-) 891 WP_111713032.1 helix-turn-helix domain-containing protein -
  DQN23_RS08455 (NCTC13774_01769) - 1684708..1686603 (-) 1896 WP_058814318.1 M13 family metallopeptidase -
  DQN23_RS08460 - 1686767..1687312 (-) 546 Protein_1623 class C sortase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7900.11 Da        Isoelectric Point: 8.0700

>NTDB_id=1023129 DQN23_RS09475 WP_228380498.1 1682544..1682756(-) (comA) [Streptococcus lutetiensis strain NCTC13774]
MIKIEHLSKTYKRLVLNDISVTFPERQVSVIVGINGSGKTIFLDCVVGFKRPSEGEIWIDGHHNQSDAFK

Nucleotide


Download         Length: 213 bp        

>NTDB_id=1023129 DQN23_RS09475 WP_228380498.1 1682544..1682756(-) (comA) [Streptococcus lutetiensis strain NCTC13774]
ATGATTAAGATTGAACACTTATCTAAAACATATAAGCGCTTGGTTTTAAATGATATTTCAGTGACTTTTCCTGAAAGACA
AGTGAGTGTTATTGTTGGTATTAATGGCAGTGGAAAGACGATATTTCTAGATTGTGTCGTTGGTTTCAAACGCCCGAGTG
AAGGTGAGATTTGGATCGACGGTCACCATAATCAATCTGATGCCTTCAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(16-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae Rx1

44.444

90

0.4
  comA Streptococcus pneumoniae D39

44.444

90

0.4
  comA Streptococcus pneumoniae R6

44.444

90

0.4
  comA Streptococcus mitis SK321

46.552

82.857

0.386
  comA Streptococcus mitis NCTC 12261

46.552

82.857

0.386