Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB2M34_RS05470 Genome accession   NZ_CP161903
Coordinates   1037790..1038434 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032790..1043434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS05440 (AB2M34_05440) - 1033140..1033508 (-) 369 WP_050258610.1 hypothetical protein -
  AB2M34_RS05445 (AB2M34_05445) - 1033623..1033748 (-) 126 WP_003228793.1 hypothetical protein -
  AB2M34_RS05450 (AB2M34_05450) degQ 1033970..1034110 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AB2M34_RS05455 (AB2M34_05455) - 1034295..1035158 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  AB2M34_RS05460 (AB2M34_05460) comX 1035160..1035381 (+) 222 WP_014480704.1 competence pheromone ComX -
  AB2M34_RS05465 (AB2M34_05465) comP 1035397..1037709 (+) 2313 WP_103330147.1 sensor histidine kinase Regulator
  AB2M34_RS05470 (AB2M34_05470) comA 1037790..1038434 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AB2M34_RS05475 (AB2M34_05475) yuxO 1038453..1038833 (+) 381 WP_069837723.1 hotdog fold thioesterase -
  AB2M34_RS05480 (AB2M34_05480) mnhG 1038872..1039246 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  AB2M34_RS05485 (AB2M34_05485) mrpF 1039230..1039514 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AB2M34_RS05490 (AB2M34_05490) mrpE 1039514..1039990 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AB2M34_RS05495 (AB2M34_05495) mrpD 1039996..1041477 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  AB2M34_RS05500 (AB2M34_05500) mrpC 1041470..1041811 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  AB2M34_RS05505 (AB2M34_05505) mrpB 1041811..1042242 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1023050 AB2M34_RS05470 WP_003220716.1 1037790..1038434(+) (comA) [Bacillus subtilis strain DYJ24]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1023050 AB2M34_RS05470 WP_003220716.1 1037790..1038434(+) (comA) [Bacillus subtilis strain DYJ24]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment