Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB2M35_RS20330 Genome accession   NZ_CP161902
Coordinates   3808646..3808765 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain DYJ22     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803646..3813765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS20305 (AB2M35_20305) albG 3803814..3804515 (+) 702 WP_069837830.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  AB2M35_RS20310 (AB2M35_20310) ywhL 3804521..3805897 (-) 1377 WP_069837831.1 YncE family protein -
  AB2M35_RS20315 (AB2M35_20315) ywhK 3805936..3807287 (-) 1352 Protein_3944 YncE family protein -
  AB2M35_RS20320 (AB2M35_20320) - 3807284..3807514 (-) 231 Protein_3945 hypothetical protein -
  AB2M35_RS20325 (AB2M35_20325) rapF 3807517..3808662 (+) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  AB2M35_RS20330 (AB2M35_20330) phrF 3808646..3808765 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  AB2M35_RS20335 (AB2M35_20335) - 3808863..3809290 (+) 428 Protein_3948 YbaK/EbsC family protein -
  AB2M35_RS20340 (AB2M35_20340) speB 3809355..3810227 (-) 873 WP_003227545.1 agmatinase -
  AB2M35_RS20345 (AB2M35_20345) speE 3810288..3811118 (-) 831 WP_003227543.1 spermidine synthase -
  AB2M35_RS20350 (AB2M35_20350) pbpG 3811320..3813395 (+) 2076 WP_069837833.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=1023029 AB2M35_RS20330 WP_009968329.1 3808646..3808765(+) (phrF) [Bacillus subtilis strain DYJ22]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1023029 AB2M35_RS20330 WP_009968329.1 3808646..3808765(+) (phrF) [Bacillus subtilis strain DYJ22]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment