Detailed information NTG1023028

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB2M35_RS20325
• Genome accession: NZ_CP161902
• Coordinates: 3807517..3808662 (+)
• Length: 381 a.a.
• NCBI ID: WP_069837832.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain DYJ22
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3802517..3813662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB2M35_RS20300 (AB2M35_20300)	albF	3802537..3803817 (+)	1281	WP_069837829.1	pitrilysin family protein	-
AB2M35_RS20305 (AB2M35_20305)	albG	3803814..3804515 (+)	702	WP_069837830.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
AB2M35_RS20310 (AB2M35_20310)	ywhL	3804521..3805897 (-)	1377	WP_069837831.1	YncE family protein	-
AB2M35_RS20315 (AB2M35_20315)	ywhK	3805936..3807287 (-)	1352	Protein_3944	YncE family protein	-
AB2M35_RS20320 (AB2M35_20320)	-	3807284..3807514 (-)	231	Protein_3945	hypothetical protein	-
AB2M35_RS20325 (AB2M35_20325)	rapF	3807517..3808662 (+)	1146	WP_069837832.1	response regulator aspartate phosphatase RapF	Regulator
AB2M35_RS20330 (AB2M35_20330)	phrF	3808646..3808765 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
AB2M35_RS20335 (AB2M35_20335)	-	3808863..3809290 (+)	428	Protein_3948	YbaK/EbsC family protein	-
AB2M35_RS20340 (AB2M35_20340)	speB	3809355..3810227 (-)	873	WP_003227545.1	agmatinase	-
AB2M35_RS20345 (AB2M35_20345)	speE	3810288..3811118 (-)	831	WP_003227543.1	spermidine synthase	-
AB2M35_RS20350 (AB2M35_20350)	pbpG	3811320..3813395 (+)	2076	WP_069837833.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45624.07 Da
• Isoelectric Point: 5.0624

>NTDB_id=1023028 AB2M35_RS20325 WP_069837832.1 3807517..3808662(+) (rapF) [Bacillus subtilis strain DYJ22]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFTIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1023028 AB2M35_RS20325 WP_069837832.1 3807517..3808662(+) (rapF) [Bacillus subtilis strain DYJ22]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACAGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCACTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.688	100	0.987
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57