Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQN23_RS00275 Genome accession   NZ_LS483403
Coordinates   33990..34745 (+) Length   251 a.a.
NCBI ID   WP_111712544.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28990..39745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS00255 (NCTC13774_00052) mreD 29506..30021 (+) 516 WP_020916183.1 rod shape-determining protein MreD -
  DQN23_RS00260 (NCTC13774_00053) - 30123..31529 (+) 1407 WP_111712542.1 CHAP domain-containing protein -
  DQN23_RS00265 (NCTC13774_00054) - 31670..32641 (+) 972 WP_043894938.1 ribose-phosphate diphosphokinase -
  DQN23_RS00270 (NCTC13774_00055) - 32825..34000 (+) 1176 WP_111712543.1 pyridoxal phosphate-dependent aminotransferase -
  DQN23_RS00275 (NCTC13774_00056) recO 33990..34745 (+) 756 WP_111712544.1 DNA repair protein RecO Machinery gene
  DQN23_RS00280 (NCTC13774_00057) plsX 34881..35876 (+) 996 WP_061409308.1 phosphate acyltransferase PlsX -
  DQN23_RS00285 (NCTC13774_00058) - 35894..36136 (+) 243 WP_043894942.1 acyl carrier protein -
  DQN23_RS00290 (NCTC13774_00059) purC 36261..36971 (+) 711 WP_111712545.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29271.84 Da        Isoelectric Point: 7.1588

>NTDB_id=1023028 DQN23_RS00275 WP_111712544.1 33990..34745(+) (recO) [Streptococcus lutetiensis strain NCTC13774]
MQNKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHASKSRFNLAIQPLTVAKFILKINDTGLSFIEDYKEVDSFKK
INADLFKLSYASYVTSLADAAVPDGVADPQLFAFLKKTLLLIEEGLDYEILTNIFEIQILERFGVSLNFHECAFCHRVGL
PFDFSHKYSGLLCPEHYVKDEHRSHLDPNVLYLVDRFQAIQFDDLKTISVKPEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGIWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1023028 DQN23_RS00275 WP_111712544.1 33990..34745(+) (recO) [Streptococcus lutetiensis strain NCTC13774]
ATGCAAAATAAGGAAACTTACGGTCTTGTCCTCTATAATCGTAATTATCGTGAGGATGATAAGTTAGTTAAAATTTTTAC
CGAGACGAATGGGAAGCACATGTTTTTTGTGAAACACGCTAGTAAATCTCGTTTTAACTTAGCTATTCAACCATTGACGG
TGGCTAAGTTTATTTTAAAAATCAATGATACTGGTTTATCTTTTATTGAGGATTACAAGGAAGTTGATTCTTTCAAGAAG
ATTAATGCGGATTTATTTAAGCTATCTTATGCGTCTTATGTGACGTCTCTAGCTGATGCTGCTGTACCAGATGGTGTTGC
AGATCCGCAGTTATTTGCCTTTTTAAAGAAGACTCTTTTGTTGATAGAAGAGGGGCTTGATTACGAGATTTTGACTAATA
TTTTTGAAATTCAGATTTTAGAACGTTTTGGTGTTAGTCTTAATTTTCATGAGTGTGCTTTTTGTCACCGTGTGGGGCTT
CCTTTTGATTTTTCTCACAAGTATTCTGGCTTGCTTTGTCCTGAACATTATGTGAAAGATGAGCATCGTAGTCATCTGGA
TCCGAATGTTCTTTATCTGGTGGATCGTTTTCAGGCGATTCAATTTGACGATTTGAAGACAATTTCTGTTAAGCCAGAGA
TGAAACGAAAATTACGTTTGTTTATTGATGATATTTATGACAATTATGTTGGTCTTCGATTGAAGAGTAAGAAATTCATC
GATGATTTAGGGATTTGGGGAAATATTATGAAGTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.347

100

0.633

Multiple sequence alignment