Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AB2M35_RS13200 Genome accession   NZ_CP161902
Coordinates   2471331..2471762 (-) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain DYJ22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2466331..2476762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS13150 (AB2M35_13150) sinI 2466525..2466698 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  AB2M35_RS13155 (AB2M35_13155) sinR 2466732..2467067 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AB2M35_RS13160 (AB2M35_13160) tasA 2467160..2467945 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  AB2M35_RS13165 (AB2M35_13165) sipW 2468009..2468581 (-) 573 WP_003230181.1 signal peptidase I SipW -
  AB2M35_RS13170 (AB2M35_13170) tapA 2468565..2469326 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  AB2M35_RS13175 (AB2M35_13175) yqzG 2469598..2469924 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  AB2M35_RS13180 (AB2M35_13180) spoIITA 2469966..2470145 (-) 180 WP_014480252.1 YqzE family protein -
  AB2M35_RS13185 (AB2M35_13185) comGG 2470216..2470590 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  AB2M35_RS13190 (AB2M35_13190) comGF 2470591..2470974 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  AB2M35_RS13195 (AB2M35_13195) comGE 2471000..2471347 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  AB2M35_RS13200 (AB2M35_13200) comGD 2471331..2471762 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  AB2M35_RS13205 (AB2M35_13205) comGC 2471752..2472048 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AB2M35_RS13210 (AB2M35_13210) comGB 2472062..2473099 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  AB2M35_RS13215 (AB2M35_13215) comGA 2473086..2474156 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  AB2M35_RS13220 (AB2M35_13220) - 2474368..2474565 (-) 198 WP_014480259.1 CBS domain-containing protein -
  AB2M35_RS13225 (AB2M35_13225) corA 2474567..2475520 (-) 954 WP_014480260.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=1022998 AB2M35_RS13200 WP_014480256.1 2471331..2471762(-) (comGD) [Bacillus subtilis strain DYJ22]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1022998 AB2M35_RS13200 WP_014480256.1 2471331..2471762(-) (comGD) [Bacillus subtilis strain DYJ22]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986

Multiple sequence alignment