Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQM80_RS09010 Genome accession   NZ_LS483399
Coordinates   1752806..1753402 (-) Length   198 a.a.
NCBI ID   WP_111702339.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747806..1758402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM80_RS08975 (NCTC8227_01780) - 1747865..1748170 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQM80_RS08980 (NCTC8227_01781) ruvX 1748182..1748601 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQM80_RS08985 (NCTC8227_01782) - 1748598..1748867 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQM80_RS08990 (NCTC8227_01783) spx 1748982..1749380 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQM80_RS08995 (NCTC8227_01784) recA 1749671..1750807 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQM80_RS09000 (NCTC8227_01785) cinA 1750896..1752167 (-) 1272 WP_111702338.1 competence/damage-inducible protein A Machinery gene
  DQM80_RS09005 (NCTC8227_01786) - 1752236..1752796 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  DQM80_RS09010 (NCTC8227_01787) ruvA 1752806..1753402 (-) 597 WP_111702339.1 Holliday junction branch migration protein RuvA Machinery gene
  DQM80_RS09015 (NCTC8227_01788) - 1753404..1754624 (-) 1221 WP_111702340.1 MDR family MFS transporter -
  DQM80_RS09020 (NCTC8227_01789) hexB 1754635..1756617 (-) 1983 WP_027968888.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21818.13 Da        Isoelectric Point: 6.7330

>NTDB_id=1022928 DQM80_RS09010 WP_111702339.1 1752806..1753402(-) (ruvA) [Streptococcus pyogenes strain NCTC8227]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GSTTALAIVAVDDNQGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1022928 DQM80_RS09010 WP_111702339.1 1752806..1753402(-) (ruvA) [Streptococcus pyogenes strain NCTC8227]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTTCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATCAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.419