Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ABU640_RS05035 Genome accession   NZ_CP161854
Coordinates   1086845..1089013 (+) Length   722 a.a.
NCBI ID   WP_170832335.1    Uniprot ID   -
Organism   Vibrio cholerae strain C3616     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081845..1094013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS05010 (ABU640_05010) - 1082233..1082808 (-) 576 WP_000999601.1 PilZ domain-containing protein -
  ABU640_RS05015 (ABU640_05015) lolC 1082984..1084192 (+) 1209 WP_219659147.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ABU640_RS05020 (ABU640_05020) lolD 1084185..1084871 (+) 687 WP_001061290.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABU640_RS05025 (ABU640_05025) lolE 1084872..1086116 (+) 1245 WP_000493013.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ABU640_RS05030 (ABU640_05030) - 1086231..1086761 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  ABU640_RS05035 (ABU640_05035) comEC 1086845..1089013 (+) 2169 WP_170832335.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABU640_RS05040 (ABU640_05040) msbA 1089044..1090792 (+) 1749 WP_000052155.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ABU640_RS05045 (ABU640_05045) lpxK 1090795..1091802 (+) 1008 WP_339443512.1 tetraacyldisaccharide 4'-kinase -
  ABU640_RS05050 (ABU640_05050) - 1091783..1091962 (+) 180 WP_000350068.1 Trm112 family protein -
  ABU640_RS05055 (ABU640_05055) kdsB 1091962..1092717 (+) 756 WP_339443513.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 81595.37 Da        Isoelectric Point: 8.1771

>NTDB_id=1022765 ABU640_RS05035 WP_170832335.1 1086845..1089013(+) (comEC) [Vibrio cholerae strain C3616]
MPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLI
HEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTAYQIVQESGIR
SSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAQLLWSP
FVCGALMAVLYAWLAGFTLPTQRALIMCLLNVALLMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQ
LASQSQRQVWWKALLWAQVFLVCLMAPLTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSVAAAYWPWV
DWTFLPLDWALRFADVGWWVVPSKVQGVVAASVAILLLYRFMNLKACSLLLGMIGLWWWFPSLTPLWRMDVLDVGHGLAI
VIEQDERAIVYDTGSSWPGGSYVQSVIEPILQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCI
RGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTHSKHSVLLSGDVTAMGEWLLARDGAQLQSEVMIVPHHGSKTSS
TAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFYPDQLDWFTQRSLGWQPWYRQMLRKG
VE

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1022765 ABU640_RS05035 WP_170832335.1 1086845..1089013(+) (comEC) [Vibrio cholerae strain C3616]
ATGCCGAGTTGGGGTTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCT
TGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAG
GGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATT
CATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAA
TGACCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATT
ACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAACCTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGG
TCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACCAGCCCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGA
GCGAAAAGGTATTGATGAACAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGC
ACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGCTCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCT
TTTGTGTGTGGGGCTTTAATGGCGGTGCTCTATGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTAT
GTGCTTACTCAATGTGGCGTTGCTCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGG
TCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTCGCGATTGTTCTCTACCAA
TTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCGCC
GCTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGG
TGATTGTTCCAGCTTTGTTTTTGGGTCTATTACTCATGGTGGTATGGCCTAGTGTGGCCGCCGCTTACTGGCCTTGGGTG
GATTGGACGTTTTTACCGCTCGATTGGGCTTTGCGGTTTGCCGATGTAGGCTGGTGGGTGGTCCCCAGCAAAGTACAAGG
TGTGGTCGCAGCGAGTGTGGCCATCCTCTTACTTTATCGATTTATGAACTTAAAAGCCTGCAGCTTATTATTGGGTATGA
TTGGCTTATGGTGGTGGTTTCCCTCTCTCACTCCACTTTGGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATT
GTGATTGAGCAAGATGAGCGAGCAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGAT
TGAGCCTATTCTCCAACAGCGAGGGCTACGCCAAGTCGATGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTG
ATTGGCAAGGTTTAGCTGAGCGCTGGCAACCTAATTGGATTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATC
CGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTATTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCA
GCATTCGTGTGTGATTCGTATGACCGATACTCATTCTAAGCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGG
AGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCATCACGGCAGTAAAACGTCGTCC
ACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAA
TCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTT
TCTATCCAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGA
GTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(183-439)

Domain of unknown function (DUF4131) (DUF4131)

(7-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

98.615

100

0.986
  comEC Vibrio parahaemolyticus RIMD 2210633

41.393

100

0.42
  comEC Vibrio campbellii strain DS40M4

41.128

100

0.414

Multiple sequence alignment