Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB1N68_RS06725 Genome accession   NZ_CP161342
Coordinates   1501877..1504093 (+) Length   738 a.a.
NCBI ID   WP_367599598.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY14325     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496877..1509093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N68_RS06705 (AB1N68_06705) - 1498741..1499364 (+) 624 WP_196134437.1 glutathione S-transferase -
  AB1N68_RS06710 (AB1N68_06710) - 1499510..1500442 (+) 933 WP_196134436.1 ABC transporter ATP-binding protein -
  AB1N68_RS06715 (AB1N68_06715) - 1500439..1501218 (+) 780 WP_023533108.1 ABC transporter permease -
  AB1N68_RS06720 (AB1N68_06720) - 1501102..1501734 (-) 633 WP_145130195.1 DUF2062 domain-containing protein -
  AB1N68_RS06725 (AB1N68_06725) comA 1501877..1504093 (+) 2217 WP_367599598.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB1N68_RS06730 (AB1N68_06730) exbB 1504155..1504790 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB1N68_RS06735 (AB1N68_06735) - 1504787..1505221 (+) 435 WP_196134435.1 biopolymer transporter ExbD -
  AB1N68_RS06740 (AB1N68_06740) lpxK 1505221..1506222 (+) 1002 WP_196134434.1 tetraacyldisaccharide 4'-kinase -
  AB1N68_RS06745 (AB1N68_06745) - 1506265..1506450 (+) 186 WP_003247142.1 Trm112 family protein -
  AB1N68_RS06750 (AB1N68_06750) kdsB 1506447..1507208 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB1N68_RS06755 (AB1N68_06755) - 1507208..1507672 (+) 465 WP_367599086.1 low molecular weight protein-tyrosine-phosphatase -
  AB1N68_RS06760 (AB1N68_06760) murB 1507669..1508688 (+) 1020 WP_367599087.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79683.30 Da        Isoelectric Point: 10.4781

>NTDB_id=1022407 AB1N68_RS06725 WP_367599598.1 1501877..1504093(+) (comA) [Pseudomonas fulva strain NY14325]
MRTGMLALALGLLSLCLVPQLPSVGWLLLLASGAVVSLFTRGWLLGVFLLGLCWACWSAKQAMDDRLAPGLEGRTLWLEG
RVVGLPARTAQGVRFDLEGAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPTGLLNPHGPDREAQLLARRIGASG
TVKAGQLLTPGSAGWRDALRERLLAVEANGRQAALVALVLGDGTGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPARVPWLPWACALAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLSAFHPLLLALVAVLLFEPL
AVLLPGFWLSFGAVATLIYTFSARLGAWRPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGSAGEALLWLAGGLLDVLFRGLALVAQQRPAWVAPALPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLLALW
APREPVSHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLHKLGVDSLDLLVVSHAHADHAGGAG
AIQRGLPVRRAIGGEPLEEVQLQPCVSGEDWEWDGVRFSLWRWADGRTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSTEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALRLVLGAQG
GVEGMRTQRRFWRDTRGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1022407 AB1N68_RS06725 WP_367599598.1 1501877..1504093(+) (comA) [Pseudomonas fulva strain NY14325]
ATGCGCACAGGGATGTTGGCGCTCGCACTCGGTCTGCTCAGTCTCTGCCTGGTACCGCAATTGCCATCGGTCGGATGGCT
GTTATTGCTTGCGTCGGGCGCCGTCGTCAGTCTGTTCACCCGCGGGTGGTTGCTGGGCGTGTTCCTGCTGGGCCTGTGCT
GGGCCTGCTGGTCTGCCAAGCAGGCCATGGATGATCGTCTGGCGCCGGGGCTCGAGGGTCGCACCTTATGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGGCGCGCACCGCGCAAGGCGTTCGCTTCGACCTTGAGGGGGCGCATTCCCGGCGTGCTGAATT
GCCGCAACGCCTGCAACTGAGCTGGTTCGACGGGCCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTGACCCTGC
AGCGGCCCACCGGGCTTTTGAACCCCCACGGGCCTGACCGGGAGGCACAGTTACTGGCACGTCGGATCGGCGCCAGCGGA
ACGGTCAAAGCCGGGCAGTTACTGACGCCTGGGTCAGCCGGCTGGCGCGATGCGCTGCGCGAGCGTCTGCTGGCGGTCGA
GGCCAACGGTCGGCAAGCCGCGCTGGTGGCGTTGGTGCTTGGCGATGGAACTGGCCTGGCGCGCGAGGACTGGCAGGCGC
TACAGGCAACCGGCACCGTGCACCTGCTAGTCATTTCAGGCCAGCACATCGGCCTGGTGGCAGGTCTGCTTTATGCCGTG
GTCGCGTGGTTGGCCCGCTGGGGGCTGTGGCCGGCCCGGGTGCCGTGGCTTCCCTGGGCCTGTGCGCTGGCCATGAGTGC
CGCGCTGGCTTATGGCTGGCTCGCTGGGGCAGGGGTGCCGGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGCCTGCGCTTTCGTCATCTGAGTGCATTTCACCCCTTGTTACTGGCGCTGGTTGCTGTGTTGCTGTTCGAGCCGTTG
GCAGTGCTGCTTCCAGGTTTCTGGTTGTCATTCGGCGCCGTGGCCACGCTCATCTACACCTTCAGTGCCCGGCTAGGGGC
CTGGCGACCCTGGCAGGCCTGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGCTGCTCCCGGTGCTGCTGGCGGTGGGTT
TGCCGGTGAGCCTGAGTGCCCCGCTCGCCAACCTGGTGGCGGTGCCGTGGGTGAGCCTGGCGGTGTTGCCGCTGGCGCTG
TTGGGCACCTTGTTGCTGCCCTTGGGAAGCGCAGGTGAGGCATTGCTGTGGCTGGCGGGCGGGCTGCTGGATGTCCTGTT
TCGCGGCCTGGCGCTGGTCGCCCAGCAGCGCCCGGCATGGGTGGCTCCCGCATTGCCGTTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCACTGCTGCTGTTGTTGCCACGGGGTGTACCGCTGCGTGGGTTGGGTGCGGTGATGCTTCTGGCACTCTGG
GCGCCTCGAGAGCCTGTCTCGCATGGCCAGGTCGAGGTCTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
TACCCGGCAGCACAGTCTGCTGTATGACGCAGGTCCGGCCAGGGGCGAAAGCGATCTGGGTGAACGGGTCGTGTTGCCCA
CCTTGCATAAATTGGGGGTCGACAGCCTGGATCTGCTGGTGGTCAGTCACGCCCATGCCGATCACGCCGGCGGTGCCGGC
GCGATCCAGCGCGGGCTGCCGGTCAGACGCGCGATTGGCGGTGAGCCGCTGGAAGAGGTTCAATTGCAGCCCTGCGTCAG
TGGCGAAGACTGGGAGTGGGACGGCGTGCGCTTTTCCCTGTGGCGCTGGGCGGATGGGCGCACCAGCAATGATCGCTCCT
GTGTGTTGCTGGTCGAGGCGTCGGGCGAGCGGTTGCTGCTGGCCGGTGACATGGAGGCGGGGGCCGAACGTGCGTGGCTG
GCTGCCATGGACTCACCACGCATCGACTGGCTGCAGTCGCCTCACCACGGCAGCCGCAGTTCGTCGACCGAAGCCTTCAT
CCGCGCTGCGGCCCCGCGTGGGGTACTGATCTCCCGCGGACGTAACAATAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGAAGGCATGGCATGACACTTCACGACACGGCAGTGGAGGGTGCGTTGCGTCTGGTGCTCGGTGCGCAAGGT
GGGGTCGAGGGTATGCGCACCCAGCGCCGGTTCTGGCGTGACACCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Domain of unknown function (DUF4131) (DUF4131)

(9-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.472

97.561

0.57
  comA Ralstonia pseudosolanacearum GMI1000

34.805

100

0.374

Multiple sequence alignment