Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB1N68_RS06730 Genome accession   NZ_CP161342
Coordinates   1504155..1504790 (+) Length   211 a.a.
NCBI ID   WP_023533075.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY14325     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499155..1509790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N68_RS06710 (AB1N68_06710) - 1499510..1500442 (+) 933 WP_196134436.1 ABC transporter ATP-binding protein -
  AB1N68_RS06715 (AB1N68_06715) - 1500439..1501218 (+) 780 WP_023533108.1 ABC transporter permease -
  AB1N68_RS06720 (AB1N68_06720) - 1501102..1501734 (-) 633 WP_145130195.1 DUF2062 domain-containing protein -
  AB1N68_RS06725 (AB1N68_06725) comA 1501877..1504093 (+) 2217 WP_367599598.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB1N68_RS06730 (AB1N68_06730) exbB 1504155..1504790 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB1N68_RS06735 (AB1N68_06735) - 1504787..1505221 (+) 435 WP_196134435.1 biopolymer transporter ExbD -
  AB1N68_RS06740 (AB1N68_06740) lpxK 1505221..1506222 (+) 1002 WP_196134434.1 tetraacyldisaccharide 4'-kinase -
  AB1N68_RS06745 (AB1N68_06745) - 1506265..1506450 (+) 186 WP_003247142.1 Trm112 family protein -
  AB1N68_RS06750 (AB1N68_06750) kdsB 1506447..1507208 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB1N68_RS06755 (AB1N68_06755) - 1507208..1507672 (+) 465 WP_367599086.1 low molecular weight protein-tyrosine-phosphatase -
  AB1N68_RS06760 (AB1N68_06760) murB 1507669..1508688 (+) 1020 WP_367599087.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22847.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1022408 AB1N68_RS06730 WP_023533075.1 1504155..1504790(+) (exbB) [Pseudomonas fulva strain NY14325]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1022408 AB1N68_RS06730 WP_023533075.1 1504155..1504790(+) (exbB) [Pseudomonas fulva strain NY14325]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATTGCTGCCATGGCTATCGTCGT
TGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGTCCTCCTCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCTTGGGCGAAATCCTCGCGGCAGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCTCACGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGCTCGCAGATGACAGCCAACGCCTCGGTGCTGGCCGGTGGTATTTCAAAGGCCCTGGTAACCACCGCA
GCCGGGTTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGTAT
GGAGCAGGAGGCGATCAAGCTGGTGGAGGTGATTCAAGGGGACCGCGAGGTGGAAGTGGCGGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment