Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QUE24_RS02980 Genome accession   NZ_AP027741
Coordinates   603571..604926 (-) Length   451 a.a.
NCBI ID   WP_286305180.1    Uniprot ID   -
Organism   Methylophaga marina strain NBRC 102421     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 598571..609926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE24_RS02955 (GCM10025856_05900) - 599268..599828 (-) 561 WP_286305176.1 sigma-E factor negative regulatory protein -
  QUE24_RS02960 (GCM10025856_05910) rpoE 599825..600403 (-) 579 WP_007145701.1 RNA polymerase sigma factor RpoE -
  QUE24_RS02965 (GCM10025856_05920) nadB 600531..602150 (+) 1620 WP_286305177.1 L-aspartate oxidase -
  QUE24_RS02970 (GCM10025856_05930) - 602110..602541 (-) 432 WP_286305178.1 protein YgfX -
  QUE24_RS02975 (GCM10025856_05940) - 602629..603570 (+) 942 WP_286305179.1 hypothetical protein -
  QUE24_RS02980 (GCM10025856_05950) pilR 603571..604926 (-) 1356 WP_286305180.1 sigma-54 dependent transcriptional regulator Regulator
  QUE24_RS02985 (GCM10025856_05960) - 604941..606527 (-) 1587 WP_286305181.1 ATP-binding protein -
  QUE24_RS02990 (GCM10025856_05970) - 606524..606742 (-) 219 WP_286305182.1 PP0621 family protein -
  QUE24_RS02995 (GCM10025856_05980) typA 606805..608634 (-) 1830 WP_286305183.1 translational GTPase TypA -
  QUE24_RS03000 (GCM10025856_05990) suhB 608692..609483 (-) 792 WP_286305184.1 inositol-1-monophosphatase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49753.21 Da        Isoelectric Point: 5.7265

>NTDB_id=102219 QUE24_RS02980 WP_286305180.1 603571..604926(-) (pilR) [Methylophaga marina strain NBRC 102421]
MNRQALVIDDEPDILELLTMTLSGMSIDCVTAENVAQATQALKQQSFDLCFTDMRLPDGNGLDIVRLIQKSYPNCPVAVI
TAHGNVDLAVEALKSGAFDFVSKPLKLKVLRDLVNSALNLSPLKTENKERRSRDKLLGDTDVIRSLRSKISKLARSQAPV
YITGESGTGKELVARLIHELGSRSAQSFVPINCGAIPAELVESEFFGHKKGAFTGAVSDKQGLFQAANGGTLFLDEVADL
PLMMQVKLLRAIQEKAIRPVGGNEEMSVDVRILSATHKNLAECVKQGHFREDLFYRLNVIELFVPPLRQRQADIPMLVDH
ILSHLATKNGENKPGIETAAIEALCAYAFPGNVRELENILERAMTWSEGNLIQKDDLMLPATTVADNAVFNVDLPQLSGE
TDLESHLEDQERQLIVDALESTRWNKTAAAKKLGISFRSLRYKLKKLALEE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=102219 QUE24_RS02980 WP_286305180.1 603571..604926(-) (pilR) [Methylophaga marina strain NBRC 102421]
ATGAATAGACAAGCATTAGTTATTGATGATGAGCCCGATATTCTTGAGTTATTAACCATGACATTGTCTGGCATGTCTAT
CGATTGCGTCACAGCAGAAAACGTAGCTCAAGCGACACAAGCATTAAAACAACAGTCATTTGATTTGTGTTTTACGGATA
TGCGTTTGCCGGACGGCAATGGTTTGGATATTGTTCGTCTGATTCAGAAATCTTATCCTAACTGTCCAGTGGCCGTGATT
ACCGCCCATGGTAATGTTGACCTGGCTGTTGAAGCACTGAAGTCGGGTGCTTTTGATTTTGTTTCAAAACCTCTCAAACT
TAAAGTGCTACGTGATCTCGTCAATTCAGCATTAAATTTATCTCCTTTAAAAACAGAAAATAAAGAGCGCCGTTCCAGAG
ATAAATTACTTGGTGATACCGATGTCATACGTTCGTTAAGAAGTAAGATCAGTAAATTGGCTCGTAGTCAGGCTCCGGTG
TATATCACCGGTGAGTCAGGAACCGGCAAAGAACTGGTAGCACGTCTTATTCATGAACTAGGCAGTCGCTCGGCGCAAAG
TTTTGTGCCCATTAATTGTGGTGCTATTCCAGCTGAATTAGTAGAAAGTGAATTCTTCGGGCATAAAAAGGGAGCTTTCA
CGGGTGCTGTCTCAGATAAGCAAGGACTGTTTCAGGCTGCCAATGGTGGCACCTTGTTTTTAGATGAAGTAGCCGACTTA
CCACTGATGATGCAGGTGAAGTTGCTTAGAGCGATTCAGGAAAAAGCCATACGACCAGTCGGTGGCAACGAAGAAATGAG
TGTTGATGTACGCATTTTATCTGCAACACATAAAAACCTAGCGGAATGTGTTAAGCAAGGCCATTTCCGGGAGGATTTGT
TTTATCGTCTCAATGTCATTGAGCTGTTTGTCCCTCCCTTACGTCAGCGACAGGCGGATATACCCATGTTGGTTGATCAT
ATTCTGAGTCATCTTGCGACCAAAAATGGTGAGAACAAACCAGGTATAGAGACGGCTGCAATTGAAGCACTTTGCGCCTA
TGCTTTCCCGGGTAATGTCCGTGAGCTTGAAAATATCCTAGAGCGAGCGATGACCTGGTCTGAAGGAAATCTCATTCAAA
AAGATGATTTAATGCTACCTGCCACAACCGTGGCCGACAATGCCGTGTTCAATGTTGATCTGCCACAGTTAAGTGGAGAG
ACGGATCTTGAATCGCATCTTGAAGATCAGGAGCGGCAGCTTATCGTGGATGCACTGGAATCAACCCGGTGGAATAAGAC
TGCCGCCGCCAAAAAGCTTGGTATCAGTTTTCGCTCGTTGCGTTACAAACTCAAAAAACTGGCTCTGGAGGAATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(6-114)

Bacterial regulatory protein, Fis family (HTH_8)

(407-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.912

100

0.603
  pilR Acinetobacter baumannii strain A118

50

100

0.51
  luxO Vibrio cholerae strain A1552

37.528

98.67

0.37

Multiple sequence alignment