Detailed information NTG1022087

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABX298_RS17950
• Genome accession: NZ_CP160798
• Coordinates: 4020219..4022435 (+)
• Length: 738 a.a.
• NCBI ID: WP_367393419.1
• Uniprot ID: -
• Organism: Pseudomonas sp. X4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4015219..4027435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX298_RS17925 (ABX298_17925)	-	4015370..4016893 (-)	1524	WP_367393418.1	hypothetical protein	-
ABX298_RS17930 (ABX298_17930)	-	4017084..4017707 (+)	624	WP_013971559.1	glutathione S-transferase	-
ABX298_RS17935 (ABX298_17935)	-	4017852..4018784 (+)	933	WP_046617069.1	ABC transporter ATP-binding protein	-
ABX298_RS17940 (ABX298_17940)	-	4018781..4019560 (+)	780	WP_003260104.1	ABC transporter permease	-
ABX298_RS17945 (ABX298_17945)	-	4019558..4020076 (-)	519	Protein_3513	DUF2062 domain-containing protein	-
ABX298_RS17950 (ABX298_17950)	comA	4020219..4022435 (+)	2217	WP_367393419.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABX298_RS17955 (ABX298_17955)	exbB	4022653..4023288 (+)	636	WP_016391244.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABX298_RS17960 (ABX298_17960)	-	4023285..4023719 (+)	435	WP_025338207.1	biopolymer transporter ExbD	-
ABX298_RS17965 (ABX298_17965)	lpxK	4023719..4024720 (+)	1002	WP_367393420.1	tetraacyldisaccharide 4'-kinase	-
ABX298_RS17970 (ABX298_17970)	-	4024765..4024950 (+)	186	WP_011532874.1	Trm112 family protein	-
ABX298_RS17975 (ABX298_17975)	kdsB	4024947..4025711 (+)	765	WP_286101257.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABX298_RS17980 (ABX298_17980)	-	4025711..4026175 (+)	465	WP_003259973.1	low molecular weight protein-tyrosine-phosphatase	-
ABX298_RS17985 (ABX298_17985)	murB	4026172..4027191 (+)	1020	WP_367393421.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 79556.29 Da
• Isoelectric Point: 9.6859

>NTDB_id=1022087 ABX298_RS17950 WP_367393419.1 4020219..4022435(+) (comA) [Pseudomonas sp. X4]
MRTGMFALALGLLCLGFLPALPSVGWLVLLALAGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLAPGLDGRTLWLEG
QVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLGYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEVLLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWHLDVGQGLAVLLRTRHHDLLYDAGPARGESDLGERVVLPTLRKLGVGGLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGEVVDDMQLQPCVSGDQWTWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRQG
EVESVRRQRRFWRDAGGG

Nucleotide

• Length: 2217 bp

>NTDB_id=1022087 ABX298_RS17950 WP_367393419.1 4020219..4022435(+) (comA) [Pseudomonas sp. X4]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTTTAGCCGGTGGCCTCGGCCTGTTCACCCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCTTGCTGGTCTGCGCAGCAGGCCCTGGATGACCGCCTGGCCCCAGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CAGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGTTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCGGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCAGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCCTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCCGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTCGGTGCGACCTTGCCGCTGCTGCTGGCGCTGGTTGCCGTGCTGCTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGGCTATTGCTTCAGTGCCCGCCTGGGCGG
CTGGCGGCCCTGGCAAGCCTGGACGCGGGCGCAATGGGTGATTGCCATCGGTTTGCTGCCGGTGCTGCTGGCTACGGGCT
TGCCCGTGAGCCTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCTTGGGTCAGCCTGGCGGTACTGCCGTTGGCGTTG
CTGGGGACTTTGCTGCTGCCGCTGGGCGGGGTAGGAGAGGTGCTGTTGTGGCTGGCGGGTGGTCTGCTCGATGTGCTTTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTGATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCATCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACGACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACTTGGGCGAGCGAGTGGTGTTGCCGA
CCTTGCGCAAGCTAGGAGTGGGTGGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGTCTGCCGGTCGAACGGGTGATCGGCGGCGAAGTGGTGGATGACATGCAACTGCAGCCTTGTGTCAG
TGGCGACCAGTGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCACGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACAGCGGAGCAGGGGGCGTTGCGGTTGGTGTTGGGGAGGCAGGGG
GAGGTCGAGAGTGTGCGCCGACAGAGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-462)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.805	97.425	0.583
comA	Ralstonia pseudosolanacearum GMI1000	35.451	100	0.378