Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABX298_RS17955 Genome accession   NZ_CP160798
Coordinates   4022653..4023288 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas sp. X4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4017653..4028288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX298_RS17935 (ABX298_17935) - 4017852..4018784 (+) 933 WP_046617069.1 ABC transporter ATP-binding protein -
  ABX298_RS17940 (ABX298_17940) - 4018781..4019560 (+) 780 WP_003260104.1 ABC transporter permease -
  ABX298_RS17945 (ABX298_17945) - 4019558..4020076 (-) 519 Protein_3513 DUF2062 domain-containing protein -
  ABX298_RS17950 (ABX298_17950) comA 4020219..4022435 (+) 2217 WP_367393419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABX298_RS17955 (ABX298_17955) exbB 4022653..4023288 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABX298_RS17960 (ABX298_17960) - 4023285..4023719 (+) 435 WP_025338207.1 biopolymer transporter ExbD -
  ABX298_RS17965 (ABX298_17965) lpxK 4023719..4024720 (+) 1002 WP_367393420.1 tetraacyldisaccharide 4'-kinase -
  ABX298_RS17970 (ABX298_17970) - 4024765..4024950 (+) 186 WP_011532874.1 Trm112 family protein -
  ABX298_RS17975 (ABX298_17975) kdsB 4024947..4025711 (+) 765 WP_286101257.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABX298_RS17980 (ABX298_17980) - 4025711..4026175 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  ABX298_RS17985 (ABX298_17985) murB 4026172..4027191 (+) 1020 WP_367393421.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=1022088 ABX298_RS17955 WP_016391244.1 4022653..4023288(+) (exbB) [Pseudomonas sp. X4]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1022088 ABX298_RS17955 WP_016391244.1 4022653..4023288(+) (exbB) [Pseudomonas sp. X4]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCCTGCGCGCGAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGCATCGACGAGCTGGTAGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment