Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABZM97_RS16380 Genome accession   NZ_CP160797
Coordinates   3274033..3274677 (-) Length   214 a.a.
NCBI ID   WP_202328144.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269033..3279677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS16345 (ABZM97_16345) - 3270224..3270655 (+) 432 WP_148963957.1 Na(+)/H(+) antiporter subunit B -
  ABZM97_RS16350 (ABZM97_16350) - 3270655..3270996 (+) 342 WP_010329900.1 Na(+)/H(+) antiporter subunit C -
  ABZM97_RS16355 (ABZM97_16355) - 3270989..3272470 (+) 1482 WP_087993402.1 Na+/H+ antiporter subunit D -
  ABZM97_RS16360 (ABZM97_16360) - 3272476..3272952 (+) 477 WP_367386986.1 Na+/H+ antiporter subunit E -
  ABZM97_RS16365 (ABZM97_16365) - 3272952..3273236 (+) 285 WP_087993404.1 Na(+)/H(+) antiporter subunit F1 -
  ABZM97_RS16370 (ABZM97_16370) mnhG 3273220..3273594 (+) 375 WP_087993405.1 monovalent cation/H(+) antiporter subunit G -
  ABZM97_RS16375 (ABZM97_16375) - 3273634..3274014 (-) 381 WP_253268529.1 hotdog fold thioesterase -
  ABZM97_RS16380 (ABZM97_16380) comA 3274033..3274677 (-) 645 WP_202328144.1 two-component system response regulator ComA Regulator
  ABZM97_RS16385 (ABZM97_16385) comP 3274758..3277070 (-) 2313 WP_367386987.1 histidine kinase Regulator
  ABZM97_RS16390 (ABZM97_16390) comX 3277086..3277307 (-) 222 WP_367386988.1 competence pheromone ComX -
  ABZM97_RS16395 (ABZM97_16395) - 3277304..3278173 (-) 870 WP_367386989.1 polyprenyl synthetase family protein -
  ABZM97_RS16400 (ABZM97_16400) degQ 3278358..3278498 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ABZM97_RS16405 (ABZM97_16405) - 3278788..3278925 (-) 138 WP_176365307.1 hypothetical protein -
  ABZM97_RS16410 (ABZM97_16410) - 3278958..3279323 (+) 366 WP_087993278.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24142.54 Da        Isoelectric Point: 4.6857

>NTDB_id=1022053 ABZM97_RS16380 WP_202328144.1 3274033..3274677(-) (comA) [Bacillus vallismortis strain BL-01]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEINGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1022053 ABZM97_RS16380 WP_202328144.1 3274033..3274677(-) (comA) [Bacillus vallismortis strain BL-01]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAACAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGATCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTACGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCCAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGGTTTACAAACCAAGAAATCGCAGATGCGCTTCATTTGAGCAAGCGGTCCATCGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGAACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment