Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABZM97_RS02235 Genome accession   NZ_CP160797
Coordinates   440203..441153 (+) Length   316 a.a.
NCBI ID   WP_087993035.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435203..446153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS02210 (ABZM97_02210) rapC 436602..437750 (+) 1149 WP_087993039.1 response regulator aspartate phosphatase RapC Regulator
  ABZM97_RS02215 (ABZM97_02215) phrC 437734..437856 (+) 123 WP_087993038.1 phosphatase RapC inhibitor PhrC Regulator
  ABZM97_RS02220 (ABZM97_02220) - 437956..438051 (-) 96 WP_148962990.1 YjcZ family sporulation protein -
  ABZM97_RS02225 (ABZM97_02225) - 438188..438301 (-) 114 WP_039075856.1 YjcZ family sporulation protein -
  ABZM97_RS02230 (ABZM97_02230) - 438452..439816 (-) 1365 WP_087993036.1 aspartate kinase -
  ABZM97_RS02235 (ABZM97_02235) ceuB 440203..441153 (+) 951 WP_087993035.1 petrobactin ABC transporter permease YclN Machinery gene
  ABZM97_RS02240 (ABZM97_02240) yclO 441146..442093 (+) 948 WP_367387162.1 petrobactin ABC transporter permease YclO -
  ABZM97_RS02245 (ABZM97_02245) yclP 442087..442845 (+) 759 WP_087993033.1 petrobactin ABC transporter ATP-binding protein YclP -
  ABZM97_RS02250 (ABZM97_02250) - 442867..443823 (+) 957 WP_367387163.1 siderophore ABC transporter substrate-binding protein -
  ABZM97_RS02255 (ABZM97_02255) - 443865..445283 (-) 1419 WP_087993031.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34926.35 Da        Isoelectric Point: 9.9364

>NTDB_id=1022002 ABZM97_RS02235 WP_087993035.1 440203..441153(+) (ceuB) [Bacillus vallismortis strain BL-01]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIIIAGLSMSICGLIMQQITRNKFVSPTTA
GTVDWARLGILISLLLFTSASPLIKMLIAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYLYADKFTVAGMGESFSVNLGLKYKRVVNIGLMIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1022002 ABZM97_RS02235 WP_087993035.1 440203..441153(+) (ceuB) [Bacillus vallismortis strain BL-01]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATCATTA
TCGCGGGTTTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACCGCG
GGCACAGTGGATTGGGCGAGGCTCGGCATTTTAATTTCTTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GATCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATT
CAGAATGTGTCATCATGGCTTCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATTTGTATGCGGATAAATTTACAGTGGCCGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TGAAGTACAAGCGGGTTGTGAACATCGGGCTCATGATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTGATTATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTAAAGAACAGCCTGCCGCACAC
GGCGCTATTGGGAGCGGTTTTTGTGCTGTTTTGCGATATATTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

100

0.532

Multiple sequence alignment