Detailed information NTG1021458

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB1S65_RS07910
• Genome accession: NZ_CP160474
• Coordinates: 1935624..1936997 (-)
• Length: 457 a.a.
• NCBI ID: WP_280947862.1
• Uniprot ID: -
• Organism: Saccharophagus degradans strain HMH0004
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1930624..1941997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1S65_RS07900 (AB1S65_07895)	-	1934459..1934896 (+)	438	WP_280947859.1	type IV pilin protein	-
AB1S65_RS07905 (AB1S65_07900)	-	1934899..1935456 (-)	558	WP_280947860.1	pilus assembly FimT family protein	-
AB1S65_RS07910 (AB1S65_07905)	pilR	1935624..1936997 (-)	1374	WP_280947862.1	sigma-54-dependent transcriptional regulator	Regulator
AB1S65_RS07915 (AB1S65_07910)	-	1936997..1938583 (-)	1587	WP_280947864.1	sensor histidine kinase	-
AB1S65_RS07920 (AB1S65_07915)	-	1938716..1940338 (+)	1623	WP_280947866.1	NAD+ synthase	-
AB1S65_RS07925 (AB1S65_07920)	-	1940672..1941577 (-)	906	WP_011469029.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50406.50 Da
• Isoelectric Point: 5.0070

>NTDB_id=1021458 AB1S65_RS07910 WP_280947862.1 1935624..1936997(-) (pilR) [Saccharophagus degradans strain HMH0004]
MTTQPKVLVIDDEPDIRELLTITLSRMDIAADTAADVAEAKAQLSKNKYNLCLTDMKLPDGNGIDIVHYIQQHSPSLPVA
LITAHGNMDIAIQAMKAGAFDFLNKPVDLASLRKLVATAIASSELPEEECDENTRIIGKSPAIQKLTGSIKKLARSQAPV
YISGESGSGKELVARSIHELGPRSNKPFMPVNCGAIQKELMESELFGHKKGAFTGAVQDKQGIFQAAEGGTLFLDEVADL
PLDMQVKLLRAIQEKAVRPVGAEAEISTDVRILCATHKNLEELVQKGDFRQDLFYRLNVIQLAVPPLRDRADDVEVLAKH
VLKKIIGPDETPPKLDKSAINALKQYSFPGNVRELENILERAYTLCEEDVIKESDLLLSDSPQLTASNSNNGSLNHYRQS
QQHDSMDDYLAEIEKEILYDALANARWNKTLAAKNLGISFRSLRYRLAKLGLDDDED

Nucleotide

• Length: 1374 bp

>NTDB_id=1021458 AB1S65_RS07910 WP_280947862.1 1935624..1936997(-) (pilR) [Saccharophagus degradans strain HMH0004]
ATGACGACACAACCAAAAGTATTGGTTATTGATGACGAGCCAGATATTCGCGAACTGCTTACTATTACCTTAAGCAGAAT
GGACATAGCTGCCGATACTGCTGCCGATGTAGCTGAAGCTAAAGCCCAGCTAAGTAAAAACAAATACAATTTATGCCTAA
CCGACATGAAACTGCCCGACGGCAACGGCATAGATATTGTGCATTATATTCAACAGCATTCGCCCAGCTTGCCGGTGGCG
CTAATAACCGCACACGGCAATATGGATATAGCAATTCAAGCCATGAAAGCTGGTGCATTTGACTTTCTAAATAAGCCCGT
CGACCTAGCCAGCCTGCGTAAACTCGTTGCCACGGCTATTGCATCTAGCGAACTACCCGAAGAGGAATGCGACGAAAATA
CTCGCATTATTGGCAAGTCTCCAGCCATACAAAAATTAACAGGCAGTATTAAAAAGCTAGCCCGCTCACAGGCGCCAGTT
TACATAAGCGGCGAATCCGGTAGCGGTAAAGAATTAGTCGCACGCTCAATCCACGAGCTTGGCCCCCGTAGCAACAAACC
ATTTATGCCCGTTAACTGCGGTGCCATCCAAAAAGAACTAATGGAAAGTGAATTGTTTGGTCACAAAAAAGGGGCTTTTA
CGGGGGCAGTGCAAGACAAACAAGGCATTTTTCAAGCTGCTGAAGGCGGTACGCTATTTCTAGATGAAGTTGCCGATTTG
CCGTTAGACATGCAAGTAAAATTACTACGCGCTATACAAGAAAAAGCGGTACGCCCCGTGGGTGCAGAAGCCGAAATAAG
CACCGATGTACGCATACTTTGCGCCACGCACAAAAACTTAGAAGAACTCGTTCAAAAAGGCGACTTCCGCCAAGATTTAT
TTTACAGACTTAACGTTATACAACTGGCCGTACCACCGCTTCGCGATCGCGCAGATGATGTTGAAGTACTCGCCAAACAT
GTACTTAAAAAAATTATAGGCCCCGACGAAACGCCGCCCAAATTAGATAAAAGCGCTATTAATGCGCTTAAACAATATAG
CTTCCCGGGCAACGTACGTGAACTAGAGAATATATTAGAGCGCGCTTATACCTTGTGTGAGGAGGATGTAATAAAAGAAA
GCGACTTATTACTGTCCGATAGCCCTCAACTAACAGCGAGCAATTCAAATAACGGCTCACTCAATCACTATAGGCAAAGT
CAGCAACATGACTCAATGGACGACTACCTCGCGGAGATCGAAAAAGAAATTTTATATGACGCACTAGCGAATGCGAGATG
GAACAAAACACTTGCGGCCAAAAACCTAGGCATTAGTTTTAGATCTTTGCGTTACCGACTTGCCAAATTAGGGTTAGACG
ACGATGAAGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.619	98.906	0.6
pilR	Acinetobacter baumannii strain A118	50.429	100	0.514
luxO	Vibrio cholerae strain A1552	37.444	97.593	0.365