Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABZP31_RS00790 Genome accession   NZ_CP160437
Coordinates   170485..171900 (-) Length   471 a.a.
NCBI ID   WP_248135015.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 165485..176900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS00775 (ABZP31_00775) lptG 166538..167608 (+) 1071 WP_034685833.1 LPS export ABC transporter permease LptG -
  ABZP31_RS00780 (ABZP31_00780) gpmI 167727..169277 (+) 1551 WP_034685834.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABZP31_RS00785 (ABZP31_00785) - 169297..170484 (+) 1188 WP_034685836.1 S41 family peptidase -
  ABZP31_RS00790 (ABZP31_00790) pilR 170485..171900 (-) 1416 WP_248135015.1 sigma-54 dependent transcriptional regulator Regulator
  ABZP31_RS00795 (ABZP31_00795) pilS 171925..173490 (-) 1566 WP_005405790.1 PAS domain-containing sensor histidine kinase Regulator
  ABZP31_RS00800 (ABZP31_00800) - 173505..174140 (-) 636 WP_005017150.1 response regulator -
  ABZP31_RS00805 (ABZP31_00805) pbpG 174359..175390 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABZP31_RS00810 (ABZP31_00810) thrC 175478..176623 (-) 1146 WP_005017146.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52997.00 Da        Isoelectric Point: 6.1946

>NTDB_id=1021110 ABZP31_RS00790 WP_248135015.1 170485..171900(-) (pilR) [Acinetobacter sp. FL]
MTNQQALILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLELVQYVSQLYPCTPI
AVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSAQQLVQDALENRMLIGTSLPIQQLKIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPGDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE
IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFRIHVMDIVLPPLREREDDILL
LAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVRELRNIIERAITLSDNEYIDLAQLQSAPLRNVQNFVAGQINHE
PLTDQVIPFTPHRKIPAEGLEQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=1021110 ABZP31_RS00790 WP_248135015.1 170485..171900(-) (pilR) [Acinetobacter sp. FL]
ATGACAAATCAGCAGGCACTTATATTATTGGTCGATGATGAGGAGGACCTTTGTACTTTAATGCAAATGTCTTTGGCCAA
AATCAATATCAGAACCCACATTGCACATGGACTGGAGCAGGCAAAAAAACTTTTTCAGCAACATGCTTATGATGCCTGCC
TGACTGATCTGAATTTGCCAGATGGCAATGGGCTGGAATTAGTCCAGTATGTTTCACAACTTTATCCTTGTACACCGATC
GCCGTTTTGACCGCCTATGGCAATATGGAAATTGCTATTTCAGCACTCAAGGCTGGCGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAGGCCCATCTACAGCAACTGGTTCAAAAAGCACTCAATACGCCTCAATCGGCTCAGCAACTGGTTCAAGATG
CTTTGGAAAATCGGATGTTGATTGGCACTTCTTTGCCAATCCAGCAGCTCAAAATTGCCTTGAAAAAAATTGCCCGTTCA
CAGGCACCTGTTTTTATTACTGGTGAATCCGGTACAGGCAAGGAAGTAGTGGCTAATCTGGTGCATCGCTTAAGTAACCG
CAGTGATGGTCCATTTATTGCTATTAACTGTGGCGCTATTCCAGGCGATCTCATGGAAAGTGAGCTGTTTGGACACAAAA
AGGGAAGTTTTACCGGCGCAAGTCAGGACAAACAGGGACTAATTTATTCTGCCCATGGCGGTAGCTTGTTTCTGGATGAA
ATTGCTGAACTGCCTCTGGCCATGCAGGTTAAATTACTCCGTGCCGTACAGGAAAAGAAAATCCGTCCGATTGGTAGTGA
TCAGGAAATTGATGTCGATTTTCGTGTAATTAGTGCCAGTCATCAGGACCTGGAAATACTGGTACAGCAAGGTAAGTTCC
GGCAGGATCTCTTCTTTCGGATTCATGTCATGGATATTGTTCTGCCCCCCCTGCGTGAACGTGAAGATGACATTCTTCTG
CTGGCTAAACATTTTATTCAGGAAGTATGTAAGGAGTGGGATATTCCCAATAAAATTCTGACCGAGCGCGGCCAGCAATT
TCTGATGCAGCAATATTTTCCGGGGAATGTGCGTGAACTGCGTAATATTATCGAACGTGCGATCACATTAAGTGATAATG
AATATATTGATTTAGCCCAACTACAAAGTGCACCTTTGCGCAATGTCCAAAATTTTGTAGCAGGCCAAATTAATCATGAA
CCGCTAACGGACCAAGTTATTCCGTTTACCCCTCACAGGAAAATTCCTGCTGAAGGCCTGGAGCAGTATCTGGAAAATAT
TGAAAAAGAAGTTCTGCTCACTGCACTGAACCAGACACACTGGAACCGGACTTTGGCTGCTAAAAAACTTGGAATGAGTT
TTCGCTCTTTACGTTATCGACTTAAAAAATTTGGGCTGGATACCGATGATGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.788

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.401

99.575

0.482

Multiple sequence alignment