Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   DQO01_RS28030 Genome accession   NZ_LS483372
Coordinates   6015385..6017382 (-) Length   665 a.a.
NCBI ID   WP_053258423.1    Uniprot ID   A0ABY1T8S3
Organism   Pseudomonas fluorescens strain NCTC10038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6010385..6022382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO01_RS28000 (NCTC10038_05665) - 6010695..6010982 (+) 288 WP_053258418.1 hypothetical protein -
  DQO01_RS28005 (NCTC10038_05666) fba 6011043..6012107 (-) 1065 WP_003177554.1 class II fructose-bisphosphate aldolase -
  DQO01_RS28010 (NCTC10038_05667) - 6012331..6012663 (-) 333 WP_053258419.1 MliC family protein -
  DQO01_RS28015 (NCTC10038_05668) - 6012725..6012952 (-) 228 WP_053258420.1 hypothetical protein -
  DQO01_RS28020 (NCTC10038_05669) - 6012982..6014145 (-) 1164 WP_053258421.1 phosphoglycerate kinase -
  DQO01_RS28025 (NCTC10038_05670) epd 6014163..6015218 (-) 1056 WP_053258422.1 erythrose-4-phosphate dehydrogenase -
  DQO01_RS28030 (NCTC10038_05671) recP/tkt 6015385..6017382 (-) 1998 WP_053258423.1 transketolase Machinery gene
  DQO01_RS28035 (NCTC10038_05672) - 6017641..6018636 (+) 996 WP_053258424.1 ArsR/SmtB family transcription factor -
  DQO01_RS28040 (NCTC10038_05673) metK 6018656..6019846 (+) 1191 WP_053258425.1 methionine adenosyltransferase -
  DQO01_RS30785 - 6019905..6020045 (+) 141 WP_167422733.1 hypothetical protein -
  DQO01_RS28045 (NCTC10038_05674) ligB 6020140..6021804 (+) 1665 WP_053258426.1 NAD-dependent DNA ligase LigB -
  DQO01_RS28050 (NCTC10038_05675) - 6021874..6022269 (+) 396 WP_053258427.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72382.55 Da        Isoelectric Point: 5.0922

>NTDB_id=1021111 DQO01_RS28030 WP_053258423.1 6015385..6017382(-) (recP/tkt) [Pseudomonas fluorescens strain NCTC10038]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLKHNPSNPSFADRDRFVLSNGHGSMLIYSLLHLTGY
DVTIDDLKSFRQLHSRTPGHPEFGYTPGVETTTGPLGQGLANAVGFALAEKVLGAQFNRPGHNIVDHHTYVFLGDGCMME
GISHEVASLAGTLGLGKLIAFYDDNGISIDGEVEGWFTDDTPKRFEAYNWQVIRNVDGHDPEEIKTAIDTARKSEQPTLI
CCKTTIGFGSPNKQGKEDCHGAPLGDAEIALTREALKWNHGPFEIPADIYAEWSAKEKGLATEAEWDQRFAAYSAEFPAL
ANELVRRLAGDLPADFSEKASAYIAEVAAKGETIASRKASQNTLNAFGPLLPEILGGSADLAGSNLTLWKGCKGVSAEDA
SGNYMYYGVREFGMSAIMNGVSLHGGLVPYGATFLMFMEYARNAVRMAALMKKRVIHVYTHDSIGLGEDGPTHQPVEQLT
SLRTTPNLDCWRPADAVESAVAWKHAIERKDGPSALIFSRQNLQHQVRTDAQIADISRGGYVLKDCAGEPELILISTGSE
VGLTVQAYDKLTEQGRKVRVVSMPCTSVFEAQDAGYKQSVLPLQVSARIAIEAAHADYWYKYVGLEGRVIGMTTYGESAP
APALFEEFGFTLENILGQAEELLED

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=1021111 DQO01_RS28030 WP_053258423.1 6015385..6017382(-) (recP/tkt) [Pseudomonas fluorescens strain NCTC10038]
ATGCCCAGCCGTCGTGAGCGTGCCAACGCCATTCGTGCCCTCAGCATGGATGCCGTGCAAAAAGCCAACAGCGGCCATCC
CGGTGCCCCGATGGGCATGGCGGATATCGCCGAGGTACTTTGGCGTGACTACCTGAAACACAACCCGAGCAACCCGTCGT
TCGCCGACCGTGACCGCTTCGTGCTGTCCAACGGCCACGGCTCGATGCTGATTTATTCGCTGCTGCACCTGACCGGCTAC
GACGTCACTATTGATGACCTCAAGAGCTTCCGCCAGCTGCACAGCCGCACCCCGGGCCACCCGGAATTCGGCTACACCCC
AGGCGTCGAGACCACCACCGGTCCCCTGGGCCAAGGCCTGGCCAACGCGGTTGGTTTCGCGCTGGCTGAAAAAGTACTGG
GCGCGCAGTTCAACCGCCCTGGCCACAACATCGTCGACCACCACACCTATGTGTTCCTCGGTGATGGCTGCATGATGGAA
GGCATTTCCCACGAAGTCGCTTCCCTGGCCGGTACCCTGGGCCTGGGCAAGCTGATTGCCTTCTACGATGACAACGGCAT
CTCCATCGACGGCGAAGTCGAAGGCTGGTTCACCGATGACACCCCGAAGCGTTTCGAAGCCTACAACTGGCAAGTAATCC
GCAACGTGGACGGCCACGATCCGGAAGAGATCAAGACCGCCATCGACACCGCGCGCAAAAGCGAGCAGCCGACCCTGATC
TGCTGCAAGACCACCATCGGTTTCGGCTCGCCGAACAAGCAAGGTAAAGAAGACTGCCACGGCGCCCCGCTGGGTGACGC
GGAAATCGCCCTAACCCGCGAAGCGCTGAAGTGGAACCACGGCCCGTTCGAAATCCCGGCCGACATCTACGCCGAGTGGA
GCGCCAAGGAAAAAGGCCTGGCGACCGAAGCCGAGTGGGACCAGCGTTTCGCTGCCTACTCCGCCGAATTCCCGGCATTG
GCCAACGAACTGGTGCGTCGCCTGGCCGGTGACCTGCCTGCCGACTTCTCGGAAAAAGCCTCGGCCTACATCGCCGAAGT
CGCGGCCAAGGGCGAGACCATCGCCAGCCGTAAAGCCAGCCAGAACACCCTGAATGCCTTCGGCCCGCTGCTGCCTGAGA
TCCTCGGCGGTTCGGCTGACCTGGCCGGTTCCAACCTGACCCTGTGGAAAGGTTGCAAAGGTGTTTCGGCGGAAGACGCC
AGCGGTAACTACATGTACTACGGCGTGCGCGAGTTCGGCATGAGCGCCATCATGAACGGCGTGTCCCTGCACGGCGGCCT
GGTGCCTTACGGCGCGACCTTCCTGATGTTCATGGAATACGCGCGCAACGCCGTGCGTATGGCCGCGCTGATGAAGAAGC
GGGTGATCCATGTGTACACCCACGACTCCATCGGCCTGGGCGAAGACGGCCCGACGCACCAGCCGGTCGAGCAATTGACC
AGCCTGCGTACCACGCCGAACCTGGATTGCTGGCGCCCAGCCGACGCGGTCGAATCCGCCGTGGCCTGGAAGCACGCCAT
CGAGCGCAAGGACGGCCCTTCGGCGCTGATCTTCTCGCGTCAGAACCTGCAACACCAAGTGCGTACCGACGCGCAGATCG
CCGACATCAGCCGTGGCGGCTACGTGCTCAAGGACTGCGCTGGCGAGCCGGAGCTGATCCTGATCTCCACCGGTTCCGAA
GTGGGCCTGACCGTTCAGGCGTACGACAAGCTCACCGAACAAGGCCGCAAGGTGCGTGTTGTATCGATGCCGTGCACCAG
CGTGTTCGAAGCCCAGGACGCCGGCTACAAGCAATCGGTATTGCCGCTGCAGGTCAGCGCGCGTATTGCCATCGAAGCGG
CTCACGCCGACTACTGGTACAAGTACGTGGGCCTGGAAGGCCGCGTGATCGGCATGACCACCTACGGTGAGTCGGCGCCG
GCGCCAGCGTTGTTCGAAGAGTTTGGTTTCACCCTGGAAAACATCCTGGGTCAGGCTGAAGAACTGCTGGAAGACTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.818

99.248

0.465

Multiple sequence alignment