Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | AB0A83_RS01210 | Genome accession | NZ_CP160405 |
| Coordinates | 272083..273435 (+) | Length | 450 a.a. |
| NCBI ID | WP_150046152.1 | Uniprot ID | - |
| Organism | Methylomonas sp. HYX-M1 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 267083..278435
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0A83_RS01195 (AB0A83_01195) | sucD | 268007..268879 (-) | 873 | WP_150046149.1 | succinate--CoA ligase subunit alpha | - |
| AB0A83_RS01200 (AB0A83_01200) | sucC | 268879..270048 (-) | 1170 | WP_150046150.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AB0A83_RS01205 (AB0A83_01205) | - | 270461..272086 (+) | 1626 | WP_150046151.1 | ATP-binding protein | - |
| AB0A83_RS01210 (AB0A83_01210) | pilR | 272083..273435 (+) | 1353 | WP_150046152.1 | sigma-54 dependent transcriptional regulator | Regulator |
| AB0A83_RS01215 (AB0A83_01215) | - | 273443..273946 (-) | 504 | WP_150046153.1 | hypothetical protein | - |
| AB0A83_RS01220 (AB0A83_01220) | - | 274086..275954 (-) | 1869 | WP_150046154.1 | GGDEF and EAL domain-containing protein | - |
| AB0A83_RS01225 (AB0A83_01225) | - | 276136..276981 (+) | 846 | WP_367155206.1 | HDOD domain-containing protein | - |
| AB0A83_RS01230 (AB0A83_01230) | - | 277179..277523 (+) | 345 | WP_367155208.1 | DUF2069 domain-containing protein | - |
| AB0A83_RS01235 (AB0A83_01235) | hda | 277529..278227 (+) | 699 | WP_150046157.1 | DnaA regulatory inactivator Hda | - |
Sequence
Protein
Download Length: 450 a.a. Molecular weight: 49459.87 Da Isoelectric Point: 6.6978
>NTDB_id=1020992 AB0A83_RS01210 WP_150046152.1 272083..273435(+) (pilR) [Methylomonas sp. HYX-M1]
MTKPVALLVDDEPDILELLEITLNRMDIQTCGAQTLAQAKQLLANQSFDLCLTDMRLPDGDGLELVDLIQSTGLSLPVAV
ITAHASVDVAIKAMKKGAFDFLTKPVDLQALRQLIGNALQISELQGASKERRTRDTLLGESAAMREIRSKIQKVARNQAP
IYISGESGSGKELVAKLIHQQSPRADKAFVAINCGAIPPELMESEFFGHKRGSFSGAIADKQGFFQAAHGGTLFLDEVAD
LPLALQVKLLRAIQEKKVRPIGEQQEVAVDIRLLSATHKDLAKMVQEGSFRQDLYYRINVIELSLPPLRARAEDIPQLAL
HVLQRLAKANGVLTPQLSASALAALQQYEFPGNVRELENILERALALHEGDCIDAGDLNIPAQHGNASFNREQQESARKN
MTLESYLQNVEKRALTAALQQNSWNKTATAQQLGMTFRSLCFRLKKFGLD
MTKPVALLVDDEPDILELLEITLNRMDIQTCGAQTLAQAKQLLANQSFDLCLTDMRLPDGDGLELVDLIQSTGLSLPVAV
ITAHASVDVAIKAMKKGAFDFLTKPVDLQALRQLIGNALQISELQGASKERRTRDTLLGESAAMREIRSKIQKVARNQAP
IYISGESGSGKELVAKLIHQQSPRADKAFVAINCGAIPPELMESEFFGHKRGSFSGAIADKQGFFQAAHGGTLFLDEVAD
LPLALQVKLLRAIQEKKVRPIGEQQEVAVDIRLLSATHKDLAKMVQEGSFRQDLYYRINVIELSLPPLRARAEDIPQLAL
HVLQRLAKANGVLTPQLSASALAALQQYEFPGNVRELENILERALALHEGDCIDAGDLNIPAQHGNASFNREQQESARKN
MTLESYLQNVEKRALTAALQQNSWNKTATAQQLGMTFRSLCFRLKKFGLD
Nucleotide
Download Length: 1353 bp
>NTDB_id=1020992 AB0A83_RS01210 WP_150046152.1 272083..273435(+) (pilR) [Methylomonas sp. HYX-M1]
ATGACCAAACCCGTTGCATTACTGGTAGACGACGAGCCCGACATTTTGGAGCTACTGGAAATTACCCTGAATCGCATGGA
CATTCAAACCTGCGGCGCACAAACTTTGGCGCAAGCCAAACAGTTGCTGGCCAATCAATCGTTCGATTTATGCTTGACCG
ACATGCGCTTGCCGGACGGAGACGGCTTGGAGTTGGTCGATTTGATTCAAAGTACCGGCTTGTCGCTGCCGGTTGCCGTA
ATCACCGCGCATGCCAGCGTCGACGTCGCAATCAAAGCCATGAAAAAAGGCGCTTTCGATTTTTTGACTAAACCGGTGGA
TTTACAGGCGTTAAGGCAGTTGATCGGCAACGCTTTACAGATATCCGAGCTGCAAGGCGCCAGCAAGGAACGCCGCACCC
GCGATACTTTGCTCGGCGAATCGGCGGCGATGCGGGAAATTCGCTCCAAGATTCAAAAAGTCGCCAGAAACCAGGCGCCG
ATTTATATCAGCGGTGAATCGGGGTCGGGCAAGGAATTGGTGGCCAAGTTGATCCATCAACAAAGTCCGCGGGCGGACAA
AGCCTTCGTTGCGATCAACTGCGGGGCGATCCCGCCTGAATTGATGGAAAGCGAATTTTTCGGACATAAGCGCGGCAGTT
TTAGCGGTGCGATAGCCGACAAACAAGGCTTTTTTCAAGCGGCGCACGGCGGAACCTTGTTCTTGGACGAAGTCGCCGAT
CTGCCGTTGGCCTTGCAGGTTAAACTACTCAGAGCCATTCAGGAAAAGAAAGTACGGCCGATAGGCGAACAACAGGAAGT
AGCGGTGGACATACGCTTACTCAGCGCCACCCACAAGGATTTGGCGAAAATGGTACAGGAAGGCAGTTTTCGTCAGGATT
TATATTACAGGATCAACGTCATCGAACTCAGCTTGCCACCGTTACGGGCCCGCGCCGAAGACATCCCCCAACTGGCATTG
CACGTGCTGCAACGATTGGCCAAGGCTAACGGCGTGCTTACCCCGCAACTGAGTGCATCCGCCCTCGCCGCACTGCAGCA
ATACGAATTTCCCGGCAACGTCCGAGAGCTCGAAAATATTTTGGAGCGCGCGTTGGCCTTGCACGAAGGCGATTGCATAG
ACGCCGGCGATTTAAACATACCGGCGCAGCACGGCAATGCGAGCTTTAACCGGGAACAGCAAGAAAGCGCACGGAAAAAC
ATGACGTTGGAAAGCTATTTGCAAAACGTCGAAAAACGGGCGCTGACAGCGGCGCTGCAACAAAACAGCTGGAACAAAAC
GGCAACTGCACAACAACTTGGAATGACGTTTCGTTCCTTGTGTTTCAGACTGAAAAAATTCGGCTTGGATTGA
ATGACCAAACCCGTTGCATTACTGGTAGACGACGAGCCCGACATTTTGGAGCTACTGGAAATTACCCTGAATCGCATGGA
CATTCAAACCTGCGGCGCACAAACTTTGGCGCAAGCCAAACAGTTGCTGGCCAATCAATCGTTCGATTTATGCTTGACCG
ACATGCGCTTGCCGGACGGAGACGGCTTGGAGTTGGTCGATTTGATTCAAAGTACCGGCTTGTCGCTGCCGGTTGCCGTA
ATCACCGCGCATGCCAGCGTCGACGTCGCAATCAAAGCCATGAAAAAAGGCGCTTTCGATTTTTTGACTAAACCGGTGGA
TTTACAGGCGTTAAGGCAGTTGATCGGCAACGCTTTACAGATATCCGAGCTGCAAGGCGCCAGCAAGGAACGCCGCACCC
GCGATACTTTGCTCGGCGAATCGGCGGCGATGCGGGAAATTCGCTCCAAGATTCAAAAAGTCGCCAGAAACCAGGCGCCG
ATTTATATCAGCGGTGAATCGGGGTCGGGCAAGGAATTGGTGGCCAAGTTGATCCATCAACAAAGTCCGCGGGCGGACAA
AGCCTTCGTTGCGATCAACTGCGGGGCGATCCCGCCTGAATTGATGGAAAGCGAATTTTTCGGACATAAGCGCGGCAGTT
TTAGCGGTGCGATAGCCGACAAACAAGGCTTTTTTCAAGCGGCGCACGGCGGAACCTTGTTCTTGGACGAAGTCGCCGAT
CTGCCGTTGGCCTTGCAGGTTAAACTACTCAGAGCCATTCAGGAAAAGAAAGTACGGCCGATAGGCGAACAACAGGAAGT
AGCGGTGGACATACGCTTACTCAGCGCCACCCACAAGGATTTGGCGAAAATGGTACAGGAAGGCAGTTTTCGTCAGGATT
TATATTACAGGATCAACGTCATCGAACTCAGCTTGCCACCGTTACGGGCCCGCGCCGAAGACATCCCCCAACTGGCATTG
CACGTGCTGCAACGATTGGCCAAGGCTAACGGCGTGCTTACCCCGCAACTGAGTGCATCCGCCCTCGCCGCACTGCAGCA
ATACGAATTTCCCGGCAACGTCCGAGAGCTCGAAAATATTTTGGAGCGCGCGTTGGCCTTGCACGAAGGCGATTGCATAG
ACGCCGGCGATTTAAACATACCGGCGCAGCACGGCAATGCGAGCTTTAACCGGGAACAGCAAGAAAGCGCACGGAAAAAC
ATGACGTTGGAAAGCTATTTGCAAAACGTCGAAAAACGGGCGCTGACAGCGGCGCTGCAACAAAACAGCTGGAACAAAAC
GGCAACTGCACAACAACTTGGAATGACGTTTCGTTCCTTGTGTTTCAGACTGAAAAAATTCGGCTTGGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
59.778 |
100 |
0.598 |
| pilR | Acinetobacter baumannii strain A118 |
49.134 |
100 |
0.504 |
| luxO | Vibrio cholerae strain A1552 |
37.613 |
98.667 |
0.371 |