Detailed information NTG1020851

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABV589_RS06975
• Genome accession: NZ_CP160398
• Coordinates: 1563415..1565628 (-)
• Length: 737 a.a.
• NCBI ID: WP_367085376.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HOU2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1558415..1570628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABV589_RS06940 (ABV589_06940)	murB	1558785..1559804 (-)	1020	WP_367085372.1	UDP-N-acetylmuramate dehydrogenase	-
ABV589_RS06945 (ABV589_06945)	-	1559801..1560265 (-)	465	WP_367085373.1	low molecular weight protein-tyrosine-phosphatase	-
ABV589_RS06950 (ABV589_06950)	kdsB	1560265..1561029 (-)	765	WP_367085374.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABV589_RS06955 (ABV589_06955)	-	1561026..1561211 (-)	186	WP_003174668.1	Trm112 family protein	-
ABV589_RS06960 (ABV589_06960)	lpxK	1561233..1562243 (-)	1011	WP_367085375.1	tetraacyldisaccharide 4'-kinase	-
ABV589_RS06965 (ABV589_06965)	-	1562243..1562671 (-)	429	WP_025112998.1	biopolymer transporter ExbD	-
ABV589_RS06970 (ABV589_06970)	exbB	1562668..1563303 (-)	636	WP_003227083.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABV589_RS06975 (ABV589_06975)	comA	1563415..1565628 (-)	2214	WP_367085376.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABV589_RS06980 (ABV589_06980)	-	1565765..1566283 (+)	519	WP_258675646.1	DUF2062 domain-containing protein	-
ABV589_RS06985 (ABV589_06985)	-	1566426..1567205 (-)	780	WP_098965044.1	ABC transporter permease	-
ABV589_RS06990 (ABV589_06990)	-	1567202..1568134 (-)	933	WP_007967569.1	ABC transporter ATP-binding protein	-
ABV589_RS06995 (ABV589_06995)	-	1568268..1568891 (-)	624	WP_367085377.1	glutathione S-transferase	-
ABV589_RS07000 (ABV589_07000)	-	1568935..1569594 (-)	660	WP_367085378.1	transglutaminase family protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 81102.53 Da
• Isoelectric Point: 10.3904

>NTDB_id=1020851 ABV589_RS06975 WP_367085376.1 1563415..1565628(-) (comA) [Pseudomonas sp. HOU2]
MRTGMMALAVGLLVPVFLPVLPPVGLMMLLPLVGLMLLPFRSYPLAFLLFGFTWACVSAQWALNDRLPAALDGETRWVEG
RVIGLPQTSEGVVRFELADARSRHEKLPSLLRLAWYGGPPLNSGERWRLAVKLRRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEASWAWRDSIRQRLLEVDGQGRGGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAAVIYLL
VAGLARLGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFDALLLLDPL
ASLRPGLWLSFAAVGILIFTFGGRLGAWKWWQTWTRAQWLIALGLCPVLLTLNLPISLSGPLANLLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSLIAGAWPAWISPSLPWWVLLLGSLGALLLLLPRGVPLRPLGWPLLLILL
APPRERVAEGLADIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALHKLGVERIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDPPGLPAILRAEACETGRQWQWDGVSFQLWQWSAAHDSNQRSCVLQIEANGERLLLTGDIDTAAE
RVLLESPLALPTHWLQAPHHGSRSSSSMALLRALRPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIHLRL
GSFQAPWLMRQQRRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=1020851 ABV589_RS06975 WP_367085376.1 1563415..1565628(-) (comA) [Pseudomonas sp. HOU2]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTTCCGGTTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCGTTGGTGGGACTGATGTTGCTGCCGTTTCGCAGCTATCCCCTGGCGTTTCTGCTGTTCGGTTTCACCT
GGGCGTGCGTCAGTGCGCAATGGGCGCTGAATGATCGCCTGCCCGCAGCGCTCGACGGCGAAACCCGTTGGGTCGAAGGG
CGGGTGATCGGCTTGCCGCAAACCAGCGAGGGCGTGGTGCGTTTCGAGCTGGCCGATGCCCGCTCGCGTCACGAGAAGCT
GCCGTCGTTGCTGCGTCTGGCGTGGTACGGCGGGCCGCCGCTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAGCTCA
GGCGCCCCGGTGGTTTGCTCAATCCCGACGCCTTCGATTACGAAGCCTGGCTGTTGGCGCAACGCATCGGCGCAACGGGC
ACGATCAAGGACGGTCAGCGCCTGGCCGAGGCCAGTTGGGCATGGCGCGACAGCATTCGGCAGCGCTTGCTTGAAGTGGA
CGGGCAGGGCCGGGGCGGTGCATTGGCGGCGCTGGTGCTCGGTGACGGCTCCGGGCTCAGTCGCGAGGACTGGCAGATCC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAACACATCGGGATGTTGGCGGCGGTGATATATCTGCTT
GTCGCCGGGCTGGCGCGTTTAGGACTGTGGCCGCTGCGTTGGCCCTGGCTGCCTTGGGCCTGTGGGCTGGCGTTTGCCGC
CGCGCTTGGTTACGGCTTGCTCGCCGGGTTTGATGTGCCGGTGCAACGGGCCTGCGTGATGGTCGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTGTTGGCATTCGATGCGTTGCTGTTGCTCGACCCGTTA
GCCAGTCTGCGCCCCGGTTTGTGGTTGTCGTTCGCCGCGGTGGGGATTTTGATTTTCACCTTCGGCGGGCGGCTCGGCGC
GTGGAAATGGTGGCAGACCTGGACCCGCGCGCAATGGCTGATTGCGCTGGGTCTGTGCCCGGTGTTGTTGACACTGAACC
TGCCGATCAGCCTCAGCGGGCCATTGGCGAATCTGCTGGCGGTGCCGTGGGTCAGTCTGCTGGTGCTGCCACCGGCGCTG
CTCGGCACGCTGTTGTTGCCGGTGCCTTACGTCGGTGCAGGCTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TCGCGGCTTGTCGCTGATCGCCGGGGCCTGGCCGGCGTGGATCTCGCCGTCGCTGCCGTGGTGGGTTTTGCTGCTTGGCA
GTCTCGGTGCCTTGTTGTTGCTGTTGCCGCGCGGCGTGCCATTGCGACCGTTGGGCTGGCCGTTGCTGTTGATTCTGCTG
GCGCCGCCGCGCGAGCGGGTGGCCGAGGGCCTGGCCGACATCTGGCAGCTCGATGTCGGTCAGGGTTTGGCGATCCTGAT
CCGCACGCGTCATCACACCTTGCTCTACGACGCCGGTCCACGCTTTGGCGATTTCGATCTGGGGGAGCGGGTGGTGCTGC
CGGCGCTGCACAAACTGGGGGTCGAGCGCATTGATTTGATGCTGCTCAGTCATGCCGACGCCGACCATGCCGGTGGTGCG
CTGGCGGTATCGCGGGGCCTGAAAGTGACGCGGGTGATCAGCGGCGATCCGCCGGGGCTGCCCGCCATCCTGCGGGCCGA
AGCCTGTGAAACCGGGCGCCAATGGCAGTGGGACGGCGTCAGTTTTCAGCTGTGGCAATGGTCGGCGGCCCATGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATCGACACGGCTGCCGAA
CGGGTTCTGCTGGAGAGTCCGTTGGCGCTGCCGACGCACTGGCTGCAAGCGCCGCATCATGGCAGTCGTAGTTCTTCTTC
GATGGCTTTGCTGCGGGCATTACGCCCGCATTCGGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGTCATCCACACC
CGCTGGTGCTCGCGCGTTACCGCCAGCAAGGGTTGCGCATCTATGACAGCGCGCAGCACGGCGCCATCCATCTGCGTCTG
GGCAGCTTCCAGGCGCCGTGGCTGATGCGTCAACAACGGCGTTTCTGGCGCTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.396	97.422	0.608
comA	Ralstonia pseudosolanacearum GMI1000	34.483	100	0.366