Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABV589_RS06970 Genome accession   NZ_CP160398
Coordinates   1562668..1563303 (-) Length   211 a.a.
NCBI ID   WP_003227083.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557668..1568303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS06940 (ABV589_06940) murB 1558785..1559804 (-) 1020 WP_367085372.1 UDP-N-acetylmuramate dehydrogenase -
  ABV589_RS06945 (ABV589_06945) - 1559801..1560265 (-) 465 WP_367085373.1 low molecular weight protein-tyrosine-phosphatase -
  ABV589_RS06950 (ABV589_06950) kdsB 1560265..1561029 (-) 765 WP_367085374.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABV589_RS06955 (ABV589_06955) - 1561026..1561211 (-) 186 WP_003174668.1 Trm112 family protein -
  ABV589_RS06960 (ABV589_06960) lpxK 1561233..1562243 (-) 1011 WP_367085375.1 tetraacyldisaccharide 4'-kinase -
  ABV589_RS06965 (ABV589_06965) - 1562243..1562671 (-) 429 WP_025112998.1 biopolymer transporter ExbD -
  ABV589_RS06970 (ABV589_06970) exbB 1562668..1563303 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABV589_RS06975 (ABV589_06975) comA 1563415..1565628 (-) 2214 WP_367085376.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABV589_RS06980 (ABV589_06980) - 1565765..1566283 (+) 519 WP_258675646.1 DUF2062 domain-containing protein -
  ABV589_RS06985 (ABV589_06985) - 1566426..1567205 (-) 780 WP_098965044.1 ABC transporter permease -
  ABV589_RS06990 (ABV589_06990) - 1567202..1568134 (-) 933 WP_007967569.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.00 Da        Isoelectric Point: 6.8768

>NTDB_id=1020850 ABV589_RS06970 WP_003227083.1 1562668..1563303(-) (exbB) [Pseudomonas sp. HOU2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1020850 ABV589_RS06970 WP_003227083.1 1562668..1563303(-) (exbB) [Pseudomonas sp. HOU2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCGATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAGCTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTGGGCCTGTTGGGCACGGTACTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTACTGGCCGGCGGTATTTCCAAGGCACTGATCACCACGGCG
GCAGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAAGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment