Detailed information NTG1020559

Bioinformatically predicted

Overview

• Name: qstR
• Type: Regulator
• Locus tag: QRP18_RS13980
• Genome accession: NZ_CP160382
• Coordinates: 3011739..3012383 (+)
• Length: 214 a.a.
• NCBI ID: WP_005480993.1
• Uniprot ID: Q87LA2
• Organism: Vibrio parahaemolyticus strain ST110-8
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	2997628..3010755	3011739..3012383	flank	984

Gene organization within MGE regions

Location: 2997628..3012383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRP18_RS13925 (QRP18_13925)	-	2997628..2997837 (+)	210	WP_123015251.1	helix-turn-helix domain-containing protein	-
QRP18_RS13930 (QRP18_13930)	-	2998174..2998518 (+)	345	WP_078558794.1	hypothetical protein	-
QRP18_RS13935 (QRP18_13935)	-	2998520..3001018 (+)	2499	WP_078558793.1	Hsp70 family protein	-
QRP18_RS13940 (QRP18_13940)	-	3001021..3002385 (+)	1365	WP_123017284.1	ATP-binding protein	-
QRP18_RS13945 (QRP18_13945)	-	3002387..3004006 (+)	1620	WP_242534314.1	hypothetical protein	-
QRP18_RS13950 (QRP18_13950)	-	3004017..3004880 (+)	864	WP_206926099.1	peptidoglycan-binding protein	-
QRP18_RS13955 (QRP18_13955)	-	3005121..3005615 (-)	495	WP_206926100.1	hypothetical protein	-
QRP18_RS13960 (QRP18_13960)	-	3005615..3007840 (-)	2226	WP_258469233.1	hypothetical protein	-
QRP18_RS13965 (QRP18_13965)	-	3007833..3009440 (-)	1608	WP_206926102.1	site-specific integrase	-
QRP18_RS13970 (QRP18_13970)	-	3009430..3010779 (-)	1350	WP_206926103.1	site-specific integrase	-
QRP18_RS13975 (QRP18_13975)	ssb	3010930..3011460 (-)	531	WP_005466625.1	single-stranded DNA-binding protein	Machinery gene
QRP18_RS13980 (QRP18_13980)	qstR	3011739..3012383 (+)	645	WP_005480993.1	LuxR C-terminal-related transcriptional regulator	Regulator

Sequence

Protein

• Length: 214 a.a.
• Molecular weight: 24386.20 Da
• Isoelectric Point: 8.7760

>NTDB_id=1020559 QRP18_RS13980 WP_005480993.1 3011739..3012383(+) (qstR) [Vibrio parahaemolyticus strain ST110-8]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide

• Length: 645 bp

>NTDB_id=1020559 QRP18_RS13980 WP_005480993.1 3011739..3012383(+) (qstR) [Vibrio parahaemolyticus strain ST110-8]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGGCTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (154-208)

3D structure

• AlphaFold DB: Q87LA2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
qstR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
qstR	Vibrio campbellii strain DS40M4	89.252	100	0.893
qstR	Vibrio cholerae strain A1552	52.093	100	0.523