Detailed information NTG1020524

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AAFM42_RS27970
• Genome accession: NZ_CP160329
• Coordinates: 5594197..5596422 (-)
• Length: 741 a.a.
• NCBI ID: WP_081006383.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain PFX1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5589197..5601422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFM42_RS27935 (AAFM42_27855)	murB	5589608..5590627 (-)	1020	WP_053256794.1	UDP-N-acetylmuramate dehydrogenase	-
AAFM42_RS27940 (AAFM42_27860)	-	5590624..5591088 (-)	465	WP_053256795.1	low molecular weight protein-tyrosine-phosphatase	-
AAFM42_RS27945 (AAFM42_27865)	kdsB	5591088..5591852 (-)	765	WP_053256796.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAFM42_RS27950 (AAFM42_27870)	-	5591849..5592034 (-)	186	WP_003174668.1	Trm112 family protein	-
AAFM42_RS27955 (AAFM42_27875)	lpxK	5592074..5593084 (-)	1011	WP_053256797.1	tetraacyldisaccharide 4'-kinase	-
AAFM42_RS27960 (AAFM42_27880)	-	5593084..5593512 (-)	429	WP_053256798.1	biopolymer transporter ExbD	-
AAFM42_RS27965 (AAFM42_27885)	exbB	5593509..5594144 (-)	636	WP_053256799.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AAFM42_RS27970 (AAFM42_27890)	comA	5594197..5596422 (-)	2226	WP_081006383.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AAFM42_RS27975 (AAFM42_27895)	-	5596453..5596974 (+)	522	WP_053256801.1	DUF2062 domain-containing protein	-
AAFM42_RS27980 (AAFM42_27900)	-	5596971..5598329 (-)	1359	WP_053256802.1	sensor histidine kinase	-
AAFM42_RS27985 (AAFM42_27905)	-	5598316..5599044 (-)	729	WP_053256803.1	response regulator transcription factor	-
AAFM42_RS27990 (AAFM42_27910)	-	5599104..5600093 (+)	990	WP_053256804.1	2-hydroxyacid dehydrogenase	-
AAFM42_RS27995 (AAFM42_27915)	-	5600094..5600534 (+)	441	WP_053256805.1	hypothetical protein	-
AAFM42_RS28000 (AAFM42_27920)	-	5600531..5600935 (+)	405	WP_053256806.1	META domain-containing protein	-
AAFM42_RS28005 (AAFM42_27925)	-	5600966..5601403 (-)	438	WP_394546384.1	TlpA disulfide reductase family protein	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79988.79 Da
• Isoelectric Point: 10.9627

>NTDB_id=1020524 AAFM42_RS27970 WP_081006383.1 5594197..5596422(-) (comA) [Pseudomonas fluorescens strain PFX1]
MRTGMFALGLGLLTLRFLPALPPTAWLLAMFVLALMLLPFRTYPLAFFLLGLGWACISAQWALNDRLQPALDGQTRWVEG
RVVGLPQQTSTGVRFELADGRSRTARLPQRIRVSWQGGPPVNSGERWRLAITLKRPAGLLNFHGFDYEAWLLAQRMGATG
SVKDGQRLAPARNAWRDSVRQRLKAVDAQGREAGLAALVLGDGSGLATADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALDGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWRIWQAWTRPQGLIAIGLFPVLLVQGLPISLSAPVANLFAVPWISLVVLPLAL
LGTLLMAVPWVGEGLLWLAGGALDGLFRGLTLLAGLRSAWVPAEVPVGYWLLSAVGAVLLLLPKGVPFRLLGWPMLMVAI
FPPRALVPHGQVEVLQLDVGQGQAVILRTRHHTMLYDAGPRSGAADLGARVVLPALQKLGVGALDLMVISHAHADHAGGA
TAVARALAVGRVVGGESAGLPAFLDTQPCISGEQWEWDGVSFELWQWSGATSPNPKSCVLRVQAQGERLLLTGDIDQAAE
RAFLTSPLAVPTDWLQAPHHGSRSSSSWPLLQRLAPSSVLISRGRGNAFGHPHPQVMERYQALGSQVYDSAERGAVRLQL
GTFQAPVVARSQRRFWREALP

Nucleotide

• Length: 2226 bp

>NTDB_id=1020524 AAFM42_RS27970 WP_081006383.1 5594197..5596422(-) (comA) [Pseudomonas fluorescens strain PFX1]
ATGAGAACAGGCATGTTCGCGCTCGGACTTGGATTGCTTACGCTGCGATTTCTACCGGCACTGCCGCCCACCGCATGGCT
GCTGGCCATGTTCGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACCTACCCGCTGGCGTTCTTCCTGCTGGGGTTGGGTT
GGGCCTGCATCAGCGCGCAATGGGCGTTGAATGATCGGCTCCAGCCGGCACTGGACGGGCAGACGCGGTGGGTAGAGGGC
CGTGTGGTTGGGTTGCCACAGCAAACGAGCACCGGCGTGCGCTTCGAATTGGCCGACGGCCGGTCGCGTACGGCTCGGTT
GCCCCAGCGTATCCGAGTGTCCTGGCAGGGTGGCCCGCCGGTAAACAGCGGCGAGCGCTGGCGGCTGGCGATCACCTTGA
AACGGCCCGCGGGGCTGCTTAATTTTCATGGCTTTGACTATGAGGCCTGGTTGCTCGCCCAGCGTATGGGGGCCACCGGT
TCGGTGAAGGATGGCCAACGCCTGGCGCCGGCCCGCAATGCCTGGCGTGACAGCGTCCGGCAGCGCTTGAAAGCAGTTGA
TGCTCAAGGTCGCGAGGCGGGCTTGGCGGCGTTGGTGCTGGGCGATGGCTCGGGGCTGGCGACCGCGGATTGGCAGGTGT
TGCAAGACACCGGAACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTCGCGGGGTTGATCTACGGCCTG
GTAGCCGGGCTGGCACGCTACGGTTGCTGGCCCCGAGCCTTGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCGTTTACCGC
TGCGCTCGGTTACGGCCTGTTGGCGGGGTTCGGTGTACCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTATTGCTGT
GGCGTCTGCGTTTTCGGCATTTAGGCGTGTGGTGGCCGTTATTACTCGCCCTCGATGGCGTGCTGGTGCTGGAGCCGTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCAGCCGTGGCGGTGCTGGTTCTGGCGTTCAGCGGGCGCTTGGGCCC
GTGGCGCATCTGGCAGGCCTGGACGCGTCCCCAAGGGTTGATCGCCATCGGTTTGTTTCCGGTATTGCTGGTGCAGGGCT
TGCCCATCAGCCTCAGCGCGCCGGTTGCCAACCTGTTTGCCGTGCCGTGGATCAGCTTGGTGGTGTTGCCTCTGGCACTG
CTGGGGACCTTGCTTATGGCGGTGCCGTGGGTGGGCGAGGGCTTGTTGTGGTTGGCCGGTGGAGCGCTTGATGGTCTGTT
CAGGGGCTTGACGCTGTTGGCGGGGCTGCGCTCGGCCTGGGTGCCTGCCGAGGTGCCCGTGGGTTATTGGTTATTAAGCG
CTGTGGGCGCGGTGTTATTGCTATTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGTTGATGGTGGCAATC
TTTCCGCCGCGGGCACTGGTGCCGCATGGGCAGGTGGAGGTGCTGCAACTGGATGTCGGGCAGGGGCAAGCGGTGATCCT
GCGCACGCGCCATCACACAATGCTCTACGACGCAGGGCCGCGCTCCGGGGCGGCCGACCTCGGTGCGCGCGTGGTGTTGC
CGGCGCTGCAAAAACTGGGGGTAGGGGCGCTGGACCTCATGGTGATCAGCCACGCCCACGCTGACCATGCCGGCGGCGCC
ACCGCGGTTGCCCGTGCGCTTGCGGTCGGGCGGGTTGTCGGCGGAGAGTCCGCAGGGCTGCCGGCGTTTCTCGATACGCA
GCCTTGCATCAGTGGTGAGCAATGGGAGTGGGATGGCGTGTCGTTTGAGCTGTGGCAATGGTCAGGCGCCACGAGCCCTA
ATCCGAAATCCTGCGTGTTGCGCGTGCAAGCCCAGGGCGAACGCCTGCTGCTGACGGGGGATATCGATCAAGCCGCTGAA
AGGGCGTTCCTCACATCCCCGCTGGCGGTGCCGACGGATTGGCTGCAAGCGCCCCACCATGGCAGCCGCAGCTCCTCATC
CTGGCCTTTGCTGCAACGCCTTGCGCCCAGCTCGGTACTGATCTCACGCGGGCGTGGCAATGCATTTGGTCATCCCCACC
CACAGGTAATGGAGCGTTATCAAGCGTTGGGCAGCCAAGTCTACGACAGCGCGGAACGGGGGGCCGTGCGTCTGCAACTG
GGTACCTTCCAAGCACCGGTTGTTGCGCGTAGTCAACGTAGATTCTGGCGCGAGGCGTTACCGTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-665)

• Competence protein (Competence) (198-462)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.388	97.031	0.576
comA	Ralstonia pseudosolanacearum GMI1000	34.591	100	0.371