Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB0R69_RS16910 Genome accession   NZ_CP160234
Coordinates   3296636..3296929 (-) Length   97 a.a.
NCBI ID   WP_144522054.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3291636..3301929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS16860 (AB0R69_16870) sinR 3291802..3292137 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AB0R69_RS16865 (AB0R69_16875) tasA 3292205..3293005 (-) 801 WP_144462730.1 biofilm matrix protein TasA -
  AB0R69_RS16870 (AB0R69_16880) sipW 3293063..3293635 (-) 573 WP_211064171.1 signal peptidase I SipW -
  AB0R69_RS16875 (AB0R69_16885) tapA 3293687..3294211 (-) 525 WP_211064170.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R69_RS16880 (AB0R69_16890) - 3294511..3294789 (+) 279 WP_249407469.1 DUF3889 domain-containing protein -
  AB0R69_RS16885 (AB0R69_16895) - 3294823..3295017 (-) 195 WP_012010560.1 YqzE family protein -
  AB0R69_RS16890 (AB0R69_16900) comGG 3295077..3295460 (-) 384 WP_144522046.1 competence type IV pilus minor pilin ComGG -
  AB0R69_RS16895 (AB0R69_16905) comGF 3295457..3295987 (-) 531 WP_249407460.1 competence type IV pilus minor pilin ComGF -
  AB0R69_RS16900 (AB0R69_16910) comGE 3295896..3296213 (-) 318 WP_144522050.1 competence type IV pilus minor pilin ComGE -
  AB0R69_RS16905 (AB0R69_16915) comGD 3296197..3296643 (-) 447 WP_144522052.1 competence type IV pilus minor pilin ComGD -
  AB0R69_RS16910 (AB0R69_16920) comGC 3296636..3296929 (-) 294 WP_144522054.1 competence type IV pilus major pilin ComGC Machinery gene
  AB0R69_RS16915 (AB0R69_16925) comGB 3296947..3298026 (-) 1080 WP_249407457.1 competence type IV pilus assembly protein ComGB -
  AB0R69_RS16920 (AB0R69_16930) comGA 3297968..3299038 (-) 1071 WP_211064169.1 competence type IV pilus ATPase ComGA Machinery gene
  AB0R69_RS16925 (AB0R69_16935) - 3299216..3300088 (-) 873 WP_211064168.1 STAS domain-containing protein -
  AB0R69_RS16935 (AB0R69_16945) - 3300312..3300692 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB0R69_RS16940 (AB0R69_16950) - 3300905..3301147 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10766.71 Da        Isoelectric Point: 7.3837

>NTDB_id=1020346 AB0R69_RS16910 WP_144522054.1 3296636..3296929(-) (comGC) [Bacillus pumilus strain JJ1368]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVNTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1020346 AB0R69_RS16910 WP_144522054.1 3296636..3296929(-) (comGC) [Bacillus pumilus strain JJ1368]
TTGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTTATTACCATTCC
GAATATCACTCGTCACCATCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAACACACAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTTATTCAAAACGGGCATGTGAAACATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

42.391

94.845

0.402
  comGC Staphylococcus aureus N315

42.391

94.845

0.402

Multiple sequence alignment