Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R69_RS16860 Genome accession   NZ_CP160234
Coordinates   3291802..3292137 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3286802..3297137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS16840 (AB0R69_16850) gcvT 3287280..3288377 (-) 1098 WP_144522038.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R69_RS16845 (AB0R69_16855) - 3288939..3290609 (+) 1671 WP_335349190.1 SNF2-related protein -
  AB0R69_RS16850 (AB0R69_16860) - 3290624..3291421 (+) 798 WP_224925732.1 YqhG family protein -
  AB0R69_RS16855 (AB0R69_16865) - 3291604..3291768 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  AB0R69_RS16860 (AB0R69_16870) sinR 3291802..3292137 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AB0R69_RS16865 (AB0R69_16875) tasA 3292205..3293005 (-) 801 WP_144462730.1 biofilm matrix protein TasA -
  AB0R69_RS16870 (AB0R69_16880) sipW 3293063..3293635 (-) 573 WP_211064171.1 signal peptidase I SipW -
  AB0R69_RS16875 (AB0R69_16885) tapA 3293687..3294211 (-) 525 WP_211064170.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R69_RS16880 (AB0R69_16890) - 3294511..3294789 (+) 279 WP_249407469.1 DUF3889 domain-containing protein -
  AB0R69_RS16885 (AB0R69_16895) - 3294823..3295017 (-) 195 WP_012010560.1 YqzE family protein -
  AB0R69_RS16890 (AB0R69_16900) comGG 3295077..3295460 (-) 384 WP_144522046.1 competence type IV pilus minor pilin ComGG -
  AB0R69_RS16895 (AB0R69_16905) comGF 3295457..3295987 (-) 531 WP_249407460.1 competence type IV pilus minor pilin ComGF -
  AB0R69_RS16900 (AB0R69_16910) comGE 3295896..3296213 (-) 318 WP_144522050.1 competence type IV pilus minor pilin ComGE -
  AB0R69_RS16905 (AB0R69_16915) comGD 3296197..3296643 (-) 447 WP_144522052.1 competence type IV pilus minor pilin ComGD -
  AB0R69_RS16910 (AB0R69_16920) comGC 3296636..3296929 (-) 294 WP_144522054.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=1020345 AB0R69_RS16860 WP_012010555.1 3291802..3292137(+) (sinR) [Bacillus pumilus strain JJ1368]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1020345 AB0R69_RS16860 WP_012010555.1 3291802..3292137(+) (sinR) [Bacillus pumilus strain JJ1368]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment