Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB0R69_RS15705 Genome accession   NZ_CP160234
Coordinates   3082211..3082822 (+) Length   203 a.a.
NCBI ID   WP_335349495.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3077211..3087822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS15665 (AB0R69_15675) - 3077378..3078496 (+) 1119 WP_284553845.1 NADH-dependent flavin oxidoreductase -
  AB0R69_RS15670 (AB0R69_15680) - 3078547..3079053 (-) 507 WP_211064267.1 PTS glucose transporter subunit IIA -
  AB0R69_RS15675 (AB0R69_15685) - 3079222..3079641 (+) 420 WP_144521281.1 Hsp20/alpha crystallin family protein -
  AB0R69_RS15680 (AB0R69_15690) - 3079662..3080114 (-) 453 WP_335349474.1 YppG family protein -
  AB0R69_RS15685 (AB0R69_15695) - 3080221..3080592 (-) 372 WP_088001031.1 YppE family protein -
  AB0R69_RS15690 (AB0R69_15700) - 3080650..3080883 (-) 234 WP_249407480.1 DUF5446 family protein -
  AB0R69_RS15695 (AB0R69_15705) sspM 3081080..3081184 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  AB0R69_RS15700 (AB0R69_15710) - 3081208..3082164 (-) 957 WP_335349473.1 DUF2515 domain-containing protein -
  AB0R69_RS15705 (AB0R69_15715) recU 3082211..3082822 (+) 612 WP_335349495.1 Holliday junction resolvase RecU Machinery gene
  AB0R69_RS15710 (AB0R69_15720) - 3082866..3085580 (+) 2715 WP_335349472.1 PBP1A family penicillin-binding protein -
  AB0R69_RS15715 (AB0R69_15725) - 3085616..3086125 (-) 510 WP_335349471.1 YpoC family protein -
  AB0R69_RS15720 (AB0R69_15730) nth 3086122..3086784 (-) 663 WP_211064263.1 endonuclease III -
  AB0R69_RS15725 (AB0R69_15735) - 3086802..3087506 (-) 705 WP_335349470.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23257.51 Da        Isoelectric Point: 9.5496

>NTDB_id=1020342 AB0R69_RS15705 WP_335349495.1 3082211..3082822(+) (recU) [Bacillus pumilus strain JJ1368]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKAELMEAGHLMTLGYSPRIDYIKVVETLHFSDESK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1020342 AB0R69_RS15705 WP_335349495.1 3082211..3082822(+) (recU) [Bacillus pumilus strain JJ1368]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAACGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAACGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAACGTGGATTATCCAAAAAGAAGTGCTGCTGTGATCAAAGAAGCCTAT
TTTAAGCAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
TACCACCTCGTTTCCGCTCAAAAATTTTCATGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCTGTTTATTATTTGCCCGCGTCAGATCTCTTTTTCTTCTGGGAACGGCAGAAG
CTAAACGGCCGGAAATCCATTAGTAAAGCTGAACTAATGGAAGCCGGTCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTAAGTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

99.507

0.719

Multiple sequence alignment