Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB0R69_RS04690 Genome accession   NZ_CP160234
Coordinates   926622..927167 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 921622..932167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS04665 (AB0R69_04665) - 921884..922492 (-) 609 WP_144503429.1 alpha/beta hydrolase -
  AB0R69_RS04670 (AB0R69_04670) - 922489..923460 (-) 972 WP_335349398.1 ring-cleaving dioxygenase -
  AB0R69_RS04675 (AB0R69_04675) - 923653..925170 (-) 1518 WP_335349397.1 ABC transporter permease/substrate-binding protein -
  AB0R69_RS04680 (AB0R69_04680) - 925163..926128 (-) 966 WP_144523558.1 ABC transporter ATP-binding protein -
  AB0R69_RS04685 (AB0R69_04685) rpsR 926338..926577 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  AB0R69_RS04690 (AB0R69_04690) ssbA 926622..927167 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB0R69_RS04695 (AB0R69_04695) rpsF 927204..927491 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  AB0R69_RS04700 (AB0R69_04700) ychF 927600..928700 (-) 1101 WP_012011909.1 redox-regulated ATPase YchF -
  AB0R69_RS04705 (AB0R69_04705) - 928917..929123 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  AB0R69_RS04710 (AB0R69_04710) - 929409..930728 (+) 1320 WP_335349396.1 hydrolase -
  AB0R69_RS04715 (AB0R69_04715) - 930744..931154 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=1020310 AB0R69_RS04690 WP_003215157.1 926622..927167(-) (ssbA) [Bacillus pumilus strain JJ1368]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1020310 AB0R69_RS04690 WP_003215157.1 926622..927167(-) (ssbA) [Bacillus pumilus strain JJ1368]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAATGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment