Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R72_RS13435 Genome accession   NZ_CP160229
Coordinates   2749944..2750279 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP46     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744944..2755279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R72_RS13415 (AB0R72_13420) gcvT 2745550..2746650 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R72_RS13420 (AB0R72_13425) - 2747074..2748744 (+) 1671 WP_031378948.1 SNF2-related protein -
  AB0R72_RS13425 (AB0R72_13430) - 2748766..2749560 (+) 795 WP_007408330.1 YqhG family protein -
  AB0R72_RS13430 (AB0R72_13435) sinI 2749737..2749910 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R72_RS13435 (AB0R72_13440) sinR 2749944..2750279 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R72_RS13440 (AB0R72_13445) tasA 2750327..2751112 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R72_RS13445 (AB0R72_13450) sipW 2751177..2751761 (-) 585 WP_015240205.1 signal peptidase I SipW -
  AB0R72_RS13450 (AB0R72_13455) tapA 2751733..2752404 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R72_RS13455 (AB0R72_13460) - 2752663..2752992 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R72_RS13460 (AB0R72_13465) - 2753032..2753211 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R72_RS13465 (AB0R72_13470) comGG 2753268..2753645 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R72_RS13470 (AB0R72_13475) comGF 2753646..2754146 (-) 501 WP_254922226.1 competence type IV pilus minor pilin ComGF -
  AB0R72_RS13475 (AB0R72_13480) comGE 2754055..2754369 (-) 315 WP_094032244.1 competence type IV pilus minor pilin ComGE -
  AB0R72_RS13480 (AB0R72_13485) comGD 2754353..2754790 (-) 438 WP_094032243.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R72_RS13485 (AB0R72_13490) comGC 2754780..2755088 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1020200 AB0R72_RS13435 WP_003153104.1 2749944..2750279(+) (sinR) [Bacillus velezensis strain AP46]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1020200 AB0R72_RS13435 WP_003153104.1 2749944..2750279(+) (sinR) [Bacillus velezensis strain AP46]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment