Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R65_RS17040 Genome accession   NZ_CP160225
Coordinates   3438452..3439141 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JJ1284     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3433452..3444141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R65_RS17005 (AB0R65_17005) - 3433649..3434131 (-) 483 WP_167340892.1 flagellar protein FlgN -
  AB0R65_RS17010 (AB0R65_17010) flgM 3434146..3434412 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R65_RS17015 (AB0R65_17015) - 3434482..3434901 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB0R65_RS17020 (AB0R65_17020) comFC 3434975..3435664 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  AB0R65_RS17025 (AB0R65_17025) - 3435670..3435954 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R65_RS17030 (AB0R65_17030) comFA 3436012..3437397 (-) 1386 WP_167340893.1 DEAD/DEAH box helicase Machinery gene
  AB0R65_RS17035 (AB0R65_17035) - 3437506..3438354 (-) 849 WP_044801920.1 DegV family protein -
  AB0R65_RS17040 (AB0R65_17040) degU 3438452..3439141 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R65_RS17045 (AB0R65_17045) degS 3439218..3440381 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R65_RS17050 (AB0R65_17050) - 3440604..3441251 (+) 648 WP_007614107.1 YigZ family protein -
  AB0R65_RS17055 (AB0R65_17055) - 3441256..3442476 (+) 1221 WP_105937243.1 LCP family protein -
  AB0R65_RS17060 (AB0R65_17060) - 3442575..3443651 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1020012 AB0R65_RS17040 WP_003219701.1 3438452..3439141(-) (degU) [Bacillus velezensis strain JJ1284]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1020012 AB0R65_RS17040 WP_003219701.1 3438452..3439141(-) (degU) [Bacillus velezensis strain JJ1284]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCTGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment