Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R65_RS17020 Genome accession   NZ_CP160225
Coordinates   3434975..3435664 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ1284     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429975..3440664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R65_RS16985 (AB0R65_16985) fliW 3430066..3430497 (-) 432 WP_015240684.1 flagellar assembly protein FliW -
  AB0R65_RS16990 (AB0R65_16990) - 3430527..3431096 (-) 570 WP_007407476.1 DUF6470 family protein -
  AB0R65_RS16995 (AB0R65_16995) flgL 3431187..3432104 (-) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  AB0R65_RS17000 (AB0R65_17000) flgK 3432116..3433633 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  AB0R65_RS17005 (AB0R65_17005) - 3433649..3434131 (-) 483 WP_167340892.1 flagellar protein FlgN -
  AB0R65_RS17010 (AB0R65_17010) flgM 3434146..3434412 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R65_RS17015 (AB0R65_17015) - 3434482..3434901 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB0R65_RS17020 (AB0R65_17020) comFC 3434975..3435664 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  AB0R65_RS17025 (AB0R65_17025) - 3435670..3435954 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R65_RS17030 (AB0R65_17030) comFA 3436012..3437397 (-) 1386 WP_167340893.1 DEAD/DEAH box helicase Machinery gene
  AB0R65_RS17035 (AB0R65_17035) - 3437506..3438354 (-) 849 WP_044801920.1 DegV family protein -
  AB0R65_RS17040 (AB0R65_17040) degU 3438452..3439141 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R65_RS17045 (AB0R65_17045) degS 3439218..3440381 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=1020010 AB0R65_RS17020 WP_197061611.1 3434975..3435664(-) (comFC) [Bacillus velezensis strain JJ1284]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1020010 AB0R65_RS17020 WP_197061611.1 3434975..3435664(-) (comFC) [Bacillus velezensis strain JJ1284]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCTGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment