Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AB0R87_RS16450 Genome accession   NZ_CP160224
Coordinates   3200619..3201794 (-) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195619..3206794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS16415 (AB0R87_16415) - 3195787..3196206 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AB0R87_RS16420 (AB0R87_16420) comFC 3196263..3196769 (-) 507 WP_050782676.1 phosphoribosyltransferase family protein Machinery gene
  AB0R87_RS16425 (AB0R87_16425) - 3196782..3196949 (-) 168 Protein_3178 ComF family protein -
  AB0R87_RS16430 (AB0R87_16430) - 3196946..3197239 (-) 294 WP_050944343.1 competence protein ComFB -
  AB0R87_RS16435 (AB0R87_16435) comFA 3197306..3198433 (-) 1128 WP_335353006.1 DEAD/DEAH box helicase Machinery gene
  AB0R87_RS16440 (AB0R87_16440) - 3198805..3199647 (-) 843 WP_003213402.1 DegV family protein -
  AB0R87_RS16445 (AB0R87_16445) degU 3199865..3200554 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R87_RS16450 (AB0R87_16450) degS 3200619..3201794 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R87_RS16455 (AB0R87_16455) - 3202016..3202684 (+) 669 WP_003212936.1 YigZ family protein -
  AB0R87_RS16460 (AB0R87_16460) - 3202669..3203757 (+) 1089 WP_212045589.1 LCP family protein -
  AB0R87_RS16465 (AB0R87_16465) - 3203794..3204861 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -
  AB0R87_RS16470 (AB0R87_16470) - 3204996..3206186 (-) 1191 WP_226805380.1 glycosyltransferase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=1019940 AB0R87_RS16450 WP_003213166.1 3200619..3201794(-) (degS) [Bacillus pumilus strain JJ950]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=1019940 AB0R87_RS16450 WP_003213166.1 3200619..3201794(-) (degS) [Bacillus pumilus strain JJ950]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTTAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACTATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCACGACGGTCCGGCCCAAATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGTATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTC
ACGAAAGACTTTGTTACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841

Multiple sequence alignment