Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R87_RS16420 Genome accession   NZ_CP160224
Coordinates   3196263..3196769 (-) Length   168 a.a.
NCBI ID   WP_050782676.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3191263..3201769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS16385 (AB0R87_16385) fliW 3191396..3191830 (-) 435 WP_050944340.1 flagellar assembly protein FliW -
  AB0R87_RS16390 (AB0R87_16390) - 3191859..3192437 (-) 579 WP_003213106.1 DUF6470 family protein -
  AB0R87_RS16395 (AB0R87_16395) flgL 3192486..3193397 (-) 912 WP_310425575.1 flagellar hook-associated protein FlgL -
  AB0R87_RS16400 (AB0R87_16400) flgK 3193407..3194927 (-) 1521 WP_003213544.1 flagellar hook-associated protein FlgK -
  AB0R87_RS16405 (AB0R87_16405) - 3194943..3195425 (-) 483 WP_003213076.1 flagellar protein FlgN -
  AB0R87_RS16410 (AB0R87_16410) flgM 3195444..3195707 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R87_RS16415 (AB0R87_16415) - 3195787..3196206 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AB0R87_RS16420 (AB0R87_16420) comFC 3196263..3196769 (-) 507 WP_050782676.1 phosphoribosyltransferase family protein Machinery gene
  AB0R87_RS16425 (AB0R87_16425) - 3196782..3196949 (-) 168 Protein_3178 ComF family protein -
  AB0R87_RS16430 (AB0R87_16430) - 3196946..3197239 (-) 294 WP_050944343.1 competence protein ComFB -
  AB0R87_RS16435 (AB0R87_16435) comFA 3197306..3198433 (-) 1128 WP_335353006.1 DEAD/DEAH box helicase Machinery gene
  AB0R87_RS16440 (AB0R87_16440) - 3198805..3199647 (-) 843 WP_003213402.1 DegV family protein -
  AB0R87_RS16445 (AB0R87_16445) degU 3199865..3200554 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19220.45 Da        Isoelectric Point: 10.5872

>NTDB_id=1019937 AB0R87_RS16420 WP_050782676.1 3196263..3196769(-) (comFC) [Bacillus pumilus strain JJ950]
MWKERPDSTTVLVKNRSVYAYNDLMKDVLSRFKFRGDTALAELFKQDVRAVFKRSFSMKEPVLIPIPLSKERLKERGFNQ
SVILASLIGEPILQPLVKIHQSKQSKKKKNERLDQKGMFQITQTDAIVQREVILIDDIYTTGATIYDAARILKEAGAKSV
SSFTLIRS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1019937 AB0R87_RS16420 WP_050782676.1 3196263..3196769(-) (comFC) [Bacillus pumilus strain JJ950]
ATGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCTTACAACGATTTGATGAAAGA
TGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGATGTCCGAGCAGTATTTAAGC
GCTCTTTTTCAATGAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAAAGGAAAGAGGGTTTAATCAG
TCCGTCATACTTGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCACTTGTAAAAATACATCAAAGCAAACAGTCCAAGAA
AAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCACGCAGACAGATGCGATCGTTCAAAGGGAAGTTATCT
TAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAGAAGCAGGTGCCAAAAGTGTT
TCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(76-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.071

100

0.524
  comFC/cflB Streptococcus mitis NCTC 12261

40.764

93.452

0.381
  comFC/cflB Streptococcus pneumoniae TIGR4

40.127

93.452

0.375
  comFC/cflB Streptococcus pneumoniae Rx1

40.127

93.452

0.375
  comFC/cflB Streptococcus pneumoniae D39

40.127

93.452

0.375
  comFC/cflB Streptococcus pneumoniae R6

40.127

93.452

0.375
  comFC/cflB Streptococcus mitis SK321

40.127

93.452

0.375

Multiple sequence alignment