Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R87_RS14830 Genome accession   NZ_CP160224
Coordinates   2885737..2886378 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain JJ950     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2880737..2891378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS14795 (AB0R87_14795) - 2881869..2882300 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  AB0R87_RS14800 (AB0R87_14800) - 2882300..2882641 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AB0R87_RS14805 (AB0R87_14805) - 2882634..2884112 (+) 1479 WP_034620106.1 Na+/H+ antiporter subunit D -
  AB0R87_RS14810 (AB0R87_14810) - 2884119..2884598 (+) 480 WP_044140819.1 Na+/H+ antiporter subunit E -
  AB0R87_RS14815 (AB0R87_14815) - 2884598..2884879 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R87_RS14820 (AB0R87_14820) mnhG 2884863..2885237 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AB0R87_RS14825 (AB0R87_14825) - 2885324..2885713 (-) 390 WP_340866485.1 hotdog fold thioesterase -
  AB0R87_RS14830 (AB0R87_14830) comA 2885737..2886378 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  AB0R87_RS14835 (AB0R87_14835) comP 2886459..2888771 (-) 2313 WP_340866486.1 ATP-binding protein Regulator
  AB0R87_RS14840 (AB0R87_14840) comX 2888805..2888975 (-) 171 WP_212045489.1 competence pheromone ComX -
  AB0R87_RS14845 (AB0R87_14845) - 2888972..2889886 (-) 915 WP_366596300.1 polyprenyl synthetase family protein -
  AB0R87_RS14850 (AB0R87_14850) degQ 2890038..2890178 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB0R87_RS14855 (AB0R87_14855) - 2890684..2891037 (+) 354 WP_212045491.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=1019931 AB0R87_RS14830 WP_003213500.1 2885737..2886378(-) (comA) [Bacillus pumilus strain JJ950]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1019931 AB0R87_RS14830 WP_003213500.1 2885737..2886378(-) (comA) [Bacillus pumilus strain JJ950]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment