Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R87_RS16445 Genome accession   NZ_CP160224
Coordinates   3199865..3200554 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain JJ950     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3194865..3205554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS16405 (AB0R87_16405) - 3194943..3195425 (-) 483 WP_003213076.1 flagellar protein FlgN -
  AB0R87_RS16410 (AB0R87_16410) flgM 3195444..3195707 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R87_RS16415 (AB0R87_16415) - 3195787..3196206 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AB0R87_RS16420 (AB0R87_16420) comFC 3196263..3196769 (-) 507 WP_050782676.1 phosphoribosyltransferase family protein Machinery gene
  AB0R87_RS16425 (AB0R87_16425) - 3196782..3196949 (-) 168 Protein_3178 ComF family protein -
  AB0R87_RS16430 (AB0R87_16430) - 3196946..3197239 (-) 294 WP_050944343.1 competence protein ComFB -
  AB0R87_RS16435 (AB0R87_16435) comFA 3197306..3198433 (-) 1128 WP_335353006.1 DEAD/DEAH box helicase Machinery gene
  AB0R87_RS16440 (AB0R87_16440) - 3198805..3199647 (-) 843 WP_003213402.1 DegV family protein -
  AB0R87_RS16445 (AB0R87_16445) degU 3199865..3200554 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R87_RS16450 (AB0R87_16450) degS 3200619..3201794 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R87_RS16455 (AB0R87_16455) - 3202016..3202684 (+) 669 WP_003212936.1 YigZ family protein -
  AB0R87_RS16460 (AB0R87_16460) - 3202669..3203757 (+) 1089 WP_212045589.1 LCP family protein -
  AB0R87_RS16465 (AB0R87_16465) - 3203794..3204861 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1019939 AB0R87_RS16445 WP_008348273.1 3199865..3200554(-) (degU) [Bacillus pumilus strain JJ950]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019939 AB0R87_RS16445 WP_008348273.1 3199865..3200554(-) (degU) [Bacillus pumilus strain JJ950]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment