Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   BAMY6614_RS11345 Genome accession   NZ_CP006960
Coordinates   2307759..2309702 (+) Length   647 a.a.
NCBI ID   WP_061862184.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 2302759..2314702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS11320 (BAMY6614_11960) def 2303133..2303615 (+) 483 WP_061862182.1 peptide deformylase -
  BAMY6614_RS11325 (BAMY6614_11965) fmt 2303620..2304573 (+) 954 WP_061862183.1 methionyl-tRNA formyltransferase -
  BAMY6614_RS11330 (BAMY6614_11970) rsmB 2304560..2305903 (+) 1344 WP_014417745.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BAMY6614_RS11335 (BAMY6614_11975) rlmN 2305907..2306998 (+) 1092 WP_014417746.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BAMY6614_RS11340 (BAMY6614_11980) - 2307004..2307765 (+) 762 WP_021493699.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  BAMY6614_RS11345 (BAMY6614_11985) stkP 2307759..2309702 (+) 1944 WP_061862184.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  BAMY6614_RS11350 (BAMY6614_11990) rsgA 2309717..2310607 (+) 891 WP_014417748.1 ribosome small subunit-dependent GTPase A -
  BAMY6614_RS11355 (BAMY6614_11995) rpe 2310609..2311259 (+) 651 WP_014417749.1 ribulose-phosphate 3-epimerase -
  BAMY6614_RS11360 (BAMY6614_12000) - 2311328..2311972 (+) 645 WP_053573430.1 thiamine diphosphokinase -
  BAMY6614_RS11365 (BAMY6614_12005) spoVM 2312059..2312139 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  BAMY6614_RS11370 (BAMY6614_12010) rpmB 2312217..2312405 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  BAMY6614_RS11375 (BAMY6614_12015) - 2312664..2313026 (+) 363 WP_061862185.1 Asp23/Gls24 family envelope stress response protein -

Sequence


Protein


Download         Length: 647 a.a.        Molecular weight: 71729.32 Da        Isoelectric Point: 5.0695

>NTDB_id=101950 BAMY6614_RS11345 WP_061862184.1 2307759..2309702(+) (stkP) [Bacillus amyloliquefaciens UMAF6614]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYITAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAKAAPQAETPGETDDKEQQPA
KKKKRKWPWVLLSVCFIFIMAAVLSVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDDKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKEKGFKHVNVKEENDDSEAGTVIDQDPSAGTDMVAS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNSLQLVEKQAHSDDVPKGQVMKQEPAAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=101950 BAMY6614_RS11345 WP_061862184.1 2307759..2309702(+) (stkP) [Bacillus amyloliquefaciens UMAF6614]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGCATGACATTAAAGGAATACATAACCGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGCATCGCCACAGCACTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGTAAAATTCCTTTTGACGGAGAAT
CAGCCGTCAGCATAGCGCTAAAGCATCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTCGAAAACATTATTTTAAAGGCAACCGCCAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAAGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTTCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTTATTACTGACGGCGCAAAAGCCGCGCCTCAGGCGGAAACGCCGGGGGAGACGGACGATAAGGAACAGCAGCCCGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGTCCGTCTGTTTCATTTTCATTATGGCGGCTGTTCTTTCGGTCAC
CGTGTTCCCGTCTTTGTTTATGCCTAAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGGCTCCGGGCGGATCCTGATATAACGGACATTGAAGATGACAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGGCGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGCTTCAAACATGTCAATG
TCAAAGAAGAGAACGATGACAGCGAGGCCGGCACCGTAATTGATCAGGACCCGTCAGCCGGCACCGACATGGTCGCAAGC
GACGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACAGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCAAAAGGACAAG
TCATGAAGCAAGAGCCGGCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATCCCTTACGAACCCGAACATGAAGGGGACGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGATCACAGCATCTCTGATACGTATGACTCGTTTAAAATAAAAGAGCCGACTGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.636

95.209

0.368

  stkP Streptococcus pneumoniae D39

38.474

95.209

0.366

  stkP Streptococcus pneumoniae R6

38.474

95.209

0.366

  stkP Streptococcus pneumoniae Rx1

38.312

95.209

0.365


Multiple sequence alignment