Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R90_RS12795 Genome accession   NZ_CP160217
Coordinates   2605331..2605666 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP52     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2600331..2610666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R90_RS12775 (AB0R90_12775) gcvT 2600937..2602037 (-) 1101 WP_099566902.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R90_RS12780 (AB0R90_12780) - 2602461..2604131 (+) 1671 WP_025284995.1 SNF2-related protein -
  AB0R90_RS12785 (AB0R90_12785) - 2604153..2604947 (+) 795 WP_015240204.1 YqhG family protein -
  AB0R90_RS12790 (AB0R90_12790) sinI 2605124..2605297 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R90_RS12795 (AB0R90_12795) sinR 2605331..2605666 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R90_RS12800 (AB0R90_12800) tasA 2605714..2606499 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R90_RS12805 (AB0R90_12805) sipW 2606564..2607148 (-) 585 WP_012117977.1 signal peptidase I SipW -
  AB0R90_RS12810 (AB0R90_12810) tapA 2607120..2607791 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R90_RS12815 (AB0R90_12815) - 2608050..2608379 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R90_RS12820 (AB0R90_12820) - 2608419..2608598 (-) 180 WP_059368116.1 YqzE family protein -
  AB0R90_RS12825 (AB0R90_12825) comGG 2608655..2609032 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R90_RS12830 (AB0R90_12830) comGF 2609033..2609533 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  AB0R90_RS12835 (AB0R90_12835) comGE 2609442..2609756 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R90_RS12840 (AB0R90_12840) comGD 2609740..2610177 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R90_RS12845 (AB0R90_12845) comGC 2610167..2610475 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019468 AB0R90_RS12795 WP_003153104.1 2605331..2605666(+) (sinR) [Bacillus velezensis strain AP52]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019468 AB0R90_RS12795 WP_003153104.1 2605331..2605666(+) (sinR) [Bacillus velezensis strain AP52]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment