Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R74_RS11765 Genome accession   NZ_CP160216
Coordinates   2445181..2445516 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ1043     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2440181..2450516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R74_RS11745 (AB0R74_11745) gcvT 2440787..2441887 (-) 1101 WP_007408332.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R74_RS11750 (AB0R74_11750) - 2442311..2443981 (+) 1671 WP_053103982.1 SNF2-related protein -
  AB0R74_RS11755 (AB0R74_11755) - 2444003..2444797 (+) 795 WP_007408330.1 YqhG family protein -
  AB0R74_RS11760 (AB0R74_11760) sinI 2444974..2445147 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R74_RS11765 (AB0R74_11765) sinR 2445181..2445516 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R74_RS11770 (AB0R74_11770) tasA 2445564..2446349 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R74_RS11775 (AB0R74_11775) sipW 2446414..2446998 (-) 585 WP_015240205.1 signal peptidase I SipW -
  AB0R74_RS11780 (AB0R74_11780) tapA 2446970..2447641 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R74_RS11785 (AB0R74_11785) - 2447900..2448229 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  AB0R74_RS11790 (AB0R74_11790) - 2448269..2448448 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R74_RS11795 (AB0R74_11795) comGG 2448505..2448882 (-) 378 WP_335536808.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R74_RS11800 (AB0R74_11800) comGF 2448883..2449383 (-) 501 WP_327992268.1 competence type IV pilus minor pilin ComGF -
  AB0R74_RS11805 (AB0R74_11805) comGE 2449292..2449606 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  AB0R74_RS11810 (AB0R74_11810) comGD 2449590..2450027 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R74_RS11815 (AB0R74_11815) comGC 2450017..2450325 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019393 AB0R74_RS11765 WP_003153104.1 2445181..2445516(+) (sinR) [Bacillus velezensis strain JJ1043]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019393 AB0R74_RS11765 WP_003153104.1 2445181..2445516(+) (sinR) [Bacillus velezensis strain JJ1043]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment