Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DQM48_RS10595 Genome accession   NZ_LS483348
Coordinates   1864561..1864773 (-) Length   70 a.a.
NCBI ID   WP_228380498.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1859561..1869773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS09520 (NCTC8738_02008) - 1860561..1861514 (+) 954 WP_058814313.1 S66 peptidase family protein -
  DQM48_RS09525 (NCTC8738_02009) - 1861602..1862108 (-) 507 WP_058814315.1 hypothetical protein -
  DQM48_RS09535 (NCTC8738_02011) - 1862482..1862757 (-) 276 WP_058814316.1 hypothetical protein -
  DQM48_RS09540 (NCTC8738_02012) - 1862984..1863937 (-) 954 WP_231853236.1 hypothetical protein -
  DQM48_RS10585 - 1864044..1864322 (-) 279 WP_231872455.1 ABC transporter ATP-binding protein -
  DQM48_RS10590 (NCTC8738_02013) - 1864294..1864518 (-) 225 WP_228380497.1 hypothetical protein -
  DQM48_RS10595 (NCTC8738_02014) comA 1864561..1864773 (-) 213 WP_228380498.1 ATP-binding cassette domain-containing protein Regulator
  DQM48_RS09550 (NCTC8738_02015) - 1864823..1865038 (-) 216 WP_043895140.1 hypothetical protein -
  DQM48_RS09555 (NCTC8738_02017) - 1865604..1866494 (-) 891 WP_043895142.1 helix-turn-helix domain-containing protein -
  DQM48_RS09560 (NCTC8738_02018) - 1866725..1868620 (-) 1896 WP_111699129.1 M13 family metallopeptidase -
  DQM48_RS09565 - 1868784..1869329 (-) 546 Protein_1836 class C sortase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7900.11 Da        Isoelectric Point: 8.0700

>NTDB_id=1019342 DQM48_RS10595 WP_228380498.1 1864561..1864773(-) (comA) [Streptococcus lutetiensis strain NCTC8738]
MIKIEHLSKTYKRLVLNDISVTFPERQVSVIVGINGSGKTIFLDCVVGFKRPSEGEIWIDGHHNQSDAFK

Nucleotide


Download         Length: 213 bp        

>NTDB_id=1019342 DQM48_RS10595 WP_228380498.1 1864561..1864773(-) (comA) [Streptococcus lutetiensis strain NCTC8738]
ATGATTAAGATTGAACACTTATCTAAAACATATAAGCGCTTGGTTTTAAATGATATTTCAGTGACTTTTCCTGAAAGACA
AGTGAGTGTTATTGTTGGTATTAATGGCAGTGGAAAGACGATATTTCTAGATTGTGTCGTTGGTTTCAAACGCCCGAGTG
AAGGTGAGATTTGGATCGACGGTCACCATAATCAATCTGATGCCTTCAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(16-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae Rx1

44.444

90

0.4
  comA Streptococcus pneumoniae D39

44.444

90

0.4
  comA Streptococcus pneumoniae R6

44.444

90

0.4
  comA Streptococcus mitis SK321

46.552

82.857

0.386
  comA Streptococcus mitis NCTC 12261

46.552

82.857

0.386

Multiple sequence alignment