Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R81_RS16920 Genome accession   NZ_CP160215
Coordinates   3432203..3432892 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JJ213     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3427203..3437892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS16885 (AB0R81_16885) - 3427401..3427883 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R81_RS16890 (AB0R81_16890) flgM 3427898..3428164 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R81_RS16895 (AB0R81_16895) - 3428234..3428653 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AB0R81_RS16900 (AB0R81_16900) comFC 3428727..3429416 (-) 690 WP_204565382.1 double zinc ribbon domain-containing protein Machinery gene
  AB0R81_RS16905 (AB0R81_16905) - 3429422..3429706 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R81_RS16910 (AB0R81_16910) comFA 3429760..3431148 (-) 1389 WP_122504228.1 DEAD/DEAH box helicase Machinery gene
  AB0R81_RS16915 (AB0R81_16915) - 3431257..3432105 (-) 849 WP_003151387.1 DegV family protein -
  AB0R81_RS16920 (AB0R81_16920) degU 3432203..3432892 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R81_RS16925 (AB0R81_16925) degS 3432969..3434132 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R81_RS16930 (AB0R81_16930) - 3434355..3435002 (+) 648 WP_061581228.1 YigZ family protein -
  AB0R81_RS16935 (AB0R81_16935) - 3435007..3436242 (+) 1236 WP_025285355.1 LCP family protein -
  AB0R81_RS16940 (AB0R81_16940) - 3436341..3437417 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1019342 AB0R81_RS16920 WP_003219701.1 3432203..3432892(-) (degU) [Bacillus velezensis strain JJ213]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019342 AB0R81_RS16920 WP_003219701.1 3432203..3432892(-) (degU) [Bacillus velezensis strain JJ213]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment