Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQM50_RS09460 Genome accession   NZ_LS483347
Coordinates   1832368..1832961 (-) Length   197 a.a.
NCBI ID   WP_003058778.1    Uniprot ID   A0ABU0A6N1
Organism   Streptococcus pyogenes strain NCTC8324     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1827368..1837961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM50_RS09425 (NCTC8324_01887) - 1827429..1827734 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQM50_RS09430 (NCTC8324_01888) ruvX 1827746..1828165 (-) 420 WP_085613595.1 Holliday junction resolvase RuvX -
  DQM50_RS09435 (NCTC8324_01889) - 1828162..1828431 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQM50_RS09440 (NCTC8324_01890) spx 1828544..1828942 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQM50_RS09445 (NCTC8324_01891) recA 1829233..1830369 (-) 1137 WP_002992179.1 recombinase RecA -
  DQM50_RS09450 (NCTC8324_01892) cinA 1830458..1831729 (-) 1272 WP_030127534.1 competence/damage-inducible protein A Machinery gene
  DQM50_RS09455 (NCTC8324_01893) - 1831798..1832358 (-) 561 WP_085613594.1 DNA-3-methyladenine glycosylase I -
  DQM50_RS09460 (NCTC8324_01894) ruvA 1832368..1832961 (-) 594 WP_003058778.1 Holliday junction branch migration protein RuvA Machinery gene
  DQM50_RS09465 (NCTC8324_01895) - 1832963..1834183 (-) 1221 WP_085613593.1 MDR family MFS transporter -
  DQM50_RS09470 (NCTC8324_01896) hexB 1834194..1836176 (-) 1983 WP_085613592.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQM50_RS09475 (NCTC8324_01897) - 1836271..1837422 (-) 1152 WP_023612650.1 tyrosine-type recombinase/integrase -
  DQM50_RS10250 - 1837744..1837887 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21741.99 Da        Isoelectric Point: 5.7322

>NTDB_id=1019229 DQM50_RS09460 WP_003058778.1 1832368..1832961(-) (ruvA) [Streptococcus pyogenes strain NCTC8324]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1019229 DQM50_RS09460 WP_003058778.1 1832368..1832961(-) (ruvA) [Streptococcus pyogenes strain NCTC8324]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.02

100

0.68
  ruvA Streptococcus pneumoniae R6

68.02

100

0.68
  ruvA Streptococcus pneumoniae D39

68.02

100

0.68
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406