Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R80_RS12820 Genome accession   NZ_CP160213
Coordinates   2634044..2634379 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM199     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2629044..2639379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R80_RS12800 (AB0R80_12800) gcvT 2629650..2630750 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R80_RS12805 (AB0R80_12805) - 2631174..2632844 (+) 1671 WP_015417810.1 SNF2-related protein -
  AB0R80_RS12810 (AB0R80_12810) - 2632866..2633660 (+) 795 WP_007408330.1 YqhG family protein -
  AB0R80_RS12815 (AB0R80_12815) sinI 2633837..2634010 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R80_RS12820 (AB0R80_12820) sinR 2634044..2634379 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R80_RS12825 (AB0R80_12825) tasA 2634427..2635212 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R80_RS12830 (AB0R80_12830) sipW 2635277..2635861 (-) 585 WP_015240205.1 signal peptidase I SipW -
  AB0R80_RS12835 (AB0R80_12835) tapA 2635833..2636504 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R80_RS12840 (AB0R80_12840) - 2636763..2637092 (+) 330 WP_060674607.1 DUF3889 domain-containing protein -
  AB0R80_RS12845 (AB0R80_12845) - 2637132..2637311 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R80_RS12850 (AB0R80_12850) comGG 2637368..2637745 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R80_RS12855 (AB0R80_12855) - 2637746..2638141 (-) 396 WP_327935032.1 ComGF family competence protein -
  AB0R80_RS12860 (AB0R80_12860) comGE 2638155..2638469 (-) 315 WP_060674611.1 competence type IV pilus minor pilin ComGE -
  AB0R80_RS12865 (AB0R80_12865) comGD 2638453..2638890 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R80_RS12870 (AB0R80_12870) comGC 2638880..2639188 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019167 AB0R80_RS12820 WP_003153104.1 2634044..2634379(+) (sinR) [Bacillus velezensis strain JM199]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019167 AB0R80_RS12820 WP_003153104.1 2634044..2634379(+) (sinR) [Bacillus velezensis strain JM199]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment