Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB0R79_RS18560 Genome accession   NZ_CP160211
Coordinates   3681348..3682733 (-) Length   461 a.a.
NCBI ID   WP_167340893.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3676348..3687733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS18525 (AB0R79_18525) flgL 3676523..3677440 (-) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  AB0R79_RS18530 (AB0R79_18530) flgK 3677452..3678969 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  AB0R79_RS18535 (AB0R79_18535) - 3678985..3679467 (-) 483 WP_167340892.1 flagellar protein FlgN -
  AB0R79_RS18540 (AB0R79_18540) flgM 3679482..3679748 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R79_RS18545 (AB0R79_18545) - 3679818..3680237 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB0R79_RS18550 (AB0R79_18550) comFC 3680311..3681000 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  AB0R79_RS18555 (AB0R79_18555) - 3681006..3681290 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R79_RS18560 (AB0R79_18560) comFA 3681348..3682733 (-) 1386 WP_167340893.1 DEAD/DEAH box helicase Machinery gene
  AB0R79_RS18565 (AB0R79_18565) - 3682842..3683690 (-) 849 WP_044801920.1 DegV family protein -
  AB0R79_RS18570 (AB0R79_18570) degU 3683788..3684477 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R79_RS18575 (AB0R79_18575) degS 3684554..3685717 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R79_RS18580 (AB0R79_18580) - 3685940..3686587 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52564.94 Da        Isoelectric Point: 10.2461

>NTDB_id=1019039 AB0R79_RS18560 WP_167340893.1 3681348..3682733(-) (comFA) [Bacillus velezensis strain JM236]
MSGGASEFSEVRDFFYGRHLLRSEVPFSDHHIKRVTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1019039 AB0R79_RS18560 WP_167340893.1 3681348..3682733(-) (comFA) [Bacillus velezensis strain JM236]
ATGTCCGGAGGTGCTTCGGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGGTACCGTT
TTCAGATCATCACATCAAGCGTGTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGATAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.582

99.132

0.62

Multiple sequence alignment